Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq24782 141 8e-29 seq19747 141 8e-29 seq27295 93.3 4e-14 seq13353 93.3 4e-14 seq948 82.4 7e-11 >seq24782 Length=13686 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || |||| ||||||| |||||||| || | |||| Sbjct 3083 GATCTTCCCCTGATGGCACTGCCTCCTTGCCTTGCCCTCTGTCAATTCTATGTAGTGAAT 3142 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||||||||| ||||||||||| || | || ||||| || || | || ||||| ||| Sbjct 3143 GGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGATATTGGCCTGGGCGTGCCCTTC 3202 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || || || |||||||| |||||||| || || Sbjct 3203 AACATTGCCAGCTATGCCCTGCTCACCTACATGATTGCACA 3243 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| || || || ||||||||||| ||||| || | || Sbjct 3243 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCA 3184 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| || | || ||||||||||| ||||||||||||||| | || |||||||| Sbjct 3183 ATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCACTACATAGAATTGA 3124 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||| || || || |||||||| || ||||| Sbjct 3123 CAGAGGGCAAGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 3083 >seq19747 Length=23491 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || || ||||| || || || ||||| ||||||| |||||||| || || ||| Sbjct 2635 GATCTTCCCCTAATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCTAAT 2694 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||||||||| ||||||||||| || | || ||||| ||||| | || ||||| ||| Sbjct 2695 GGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTC 2754 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || || | |||||||| |||||||| || || Sbjct 2755 AACATTGCCAGCTATTCCCTGCTCACCTACATGATTGCACA 2795 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| | || || ||||||||||| ||||| || | ||| Sbjct 2795 TGTGCAATCATGTAGGTGAGCAGGGAATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCC 2736 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| || | || ||||||||||| |||||||||||||| || || |||||||| Sbjct 2735 ATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTAGCTACATAGAATTGA 2676 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || ||||| || || ||||| Sbjct 2675 CAGAGGGCATGGCAAGGAGGCAGTGCCATTAGGGGAAGATC 2635 >seq27295 Length=6846 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| |||||||||||||| || || || ||||||| ||| || |||| Sbjct 431 TAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGT 490 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | ||| ||| | |||||||||| ||||| ||||| | || |||||||| || Sbjct 491 CGCGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTC 550 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || || ||| || || || || | || |||| Sbjct 551 ACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGG 584 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| || |||| |||||||| || | ||||| | Sbjct 584 CCACAAATGCTAAAGAACTGTCCTCCAAAGGAGTGAGAATCTGGGATGCCAATGGGTCCC 525 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||| |||||||||| | ||| ||| | | || |||| || ||| ||||||| || | Sbjct 524 GAGATTTTCTGGACAGCCTGGGATTCTCTGCGCGACAGGAAGGGGACCTGGGCCCAGTTT 465 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| ||||| || || || Sbjct 464 ATGGTTTCCAGTGGAGACATTTTGGCGCAGACTA 431 >seq13353 Length=41068 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || ||| || |||| |||||||| || | ||||| | Sbjct 39344 CCACAAATGCTAAAGAACTGTCCTCCAAAGGAGTGAGAATCTGGGATGCCAATGGGTCCC 39403 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||| |||||||||| | ||| ||| | | || |||| || ||| ||||||| || | Sbjct 39404 GAGATTTTCTGGACAGCCTGGGATTCTCTGCGCGACAGGAAGGGGACCTGGGCCCAGTTT 39463 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || |||||||||||||| ||||| || || || Sbjct 39464 ATGGTTTCCAGTGGAGACATTTTGGCGCAGACTA 39497 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||| |||||||||||||| || || || ||||||| ||| || |||| Sbjct 39497 TAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGT 39438 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | | ||| ||| | |||||||||| ||||| ||||| | || |||||||| || Sbjct 39437 CGCGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTC 39378 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || || ||| || || || || | || |||| Sbjct 39377 ACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGG 39344 >seq948 Length=285047 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 6489 GAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCT 6548 ||| ||||||||||| ||||| |||| |||||||| || ||||| || || ||| Sbjct 208540 GAAGAATTTTGAGCTTTGGGAAAGGTCTTGGCTCTCGCTGAAGCTGAATTTTCAG-GGCT 208598 Query 6549 CGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGG 6603 |||| || |||||||| ||||| ||||| ||||| || || || | ||||| || Sbjct 208599 CGATATGATTCAGGTAAATATGTGCATCTCCCAAGGTGTGGACAAAATCCCCTGG 208653 Score = 82.4 bits (90), Expect = 7e-11 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 34742 CCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGG 34801 || ||||| | || || || ||||| ||||| ||||| |||||||| || ||||||| Sbjct 208653 CCAGGGGATTTTGTCCACACCTTGGGAGATGCACATATTTACCTGAATCATATCGAGCC- 208595 Query 34802 CTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTC 34856 || || ||||| || |||||||| |||| ||||| ||||||||||| ||| Sbjct 208594 CTGAAAATTCAGCTTCAGCGAGAGCCAAGACCTTTCCCAAAGCTCAAAATTCTTC 208540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447935039572560