Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq7195 178 1e-39 seq2199 118 9e-22 seq19747 96.9 3e-15 seq24782 87.8 1e-12 >seq7195 Length=137916 Score = 178 bits (196), Expect = 1e-39 Identities = 181/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| ||||| ||||||||||||||||| ||||| || || Sbjct 43982 ATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACATGGTCACTTACAGCAAA 43923 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 | ||| || ||||| || ||||| ||||| | ||| | | ||||| |||||||| ||| Sbjct 43922 GCCCATGGAGTTGTAGTCCAGCCTGCATATAGAGACAGGGTAAACATCACTGAGCTGGGA 43863 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||||||| || ||||||||||||||||| |||| ||||| || ||||||| | Sbjct 43862 CTCTGGAACACAAGCATCACCTTCTGGAACACAACCCTGGACGATGAGGGCTGCTACATG 43803 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || || || |||| ||||||||||| ||||| | || || || ||||| Sbjct 43802 TGTCTCTTCAATACATTTGTTTCTGGGAAGATCTCAGGGACAGCCTGCCTCACCCT 43747 >seq2199 Length=581885 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 475038 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 474979 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 474978 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 474919 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || || ||||||||| || Sbjct 474918 ATCGCACTGTGGATGACTGA 474899 >seq19747 Length=23491 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 118539 TGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGAACACC 118598 ||| | ||| ||||||||||| || | || |||||||| | || || || || || Sbjct 2802 TGTGATGTGTGCAATCATGTAGGTGAGCAGGGAATAGCTGGCAATGTTGAAGGGCACGCC 2743 Query 118599 CAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCAACATA 118658 ||| ||||| ||| |||| |||||||| | |||||||| |||||||| || || ||||| Sbjct 2742 CAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTAGCTACATA 2683 Query 118659 AAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 || |||| | | || || |||||||| |||| Sbjct 2682 GAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 2647 >seq24782 Length=13686 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| ||||||||||| || | || |||||||| | || || || Sbjct 3255 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 3196 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| || || ||| |||| |||||||| | |||||||| |||||||| || | Sbjct 3195 ACGCCCAGGCCAATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCACT 3136 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| || |||| | | | || |||||||| |||| Sbjct 3135 ACATAGAATTGACAGAGGGCAAGGCAAGGAGGCAGTGCCAT 3095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414181679954572