Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq22505 82.4 5e-11 seq5999 82.4 5e-11 >seq22505 Length=6242 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || || || || | || |||||||| || || |||| Sbjct 3314 GACAAGGAAGGCATCCCACCTGACCATCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAG 3255 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | | ||||||||||||||||||| |||||| ||||||||| |||| | Sbjct 3254 GATGGCCGGACCCTGTCCGATTACAACATCCAGAAAGAGTCCACTTTGCACCTGGTGCTT 3195 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 3194 CGTCTGCGTGGAGGC 3180 >seq5999 Length=119422 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| ||||| | || || || || || | || |||||||| || || |||| Sbjct 2929 GACAAGGAAGGCATCCCACCTGACCATCAGAGGCTGATATTTGCCGGCAAGCAGCTGGAG 2988 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | || | | ||||||||||||||||||| |||||| ||||||||| |||| | Sbjct 2989 GATGGCCGGACCCTGTCCGATTACAACATCCAGAAAGAGTCCACTTTGCACCTGGTGCTT 3048 Query 28003 CGTTTGCGTGGCGGC 28017 ||| ||||||| ||| Sbjct 3049 CGTCTGCGTGGAGGC 3063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355609015184121