Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5338 104 2e-17 seq2959 104 2e-17 seq248 100 2e-16 >seq5338 Length=92157 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| |||||| || || || ||||| | ||| || || | || || Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || || ||||||||||||| ||| | || |||||| ||| | Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | || || |||| | |||| |||| ||||| |||| Sbjct 52281 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTG 52340 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | ||||| || || | ||||||||||| || Sbjct 52341 CTGGTCAGGGTCTTCATGAAGATTTGCATTTT 52372 >seq2959 Length=310600 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| |||||| || || || ||||| | ||| || || | || || Sbjct 279635 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 279694 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || || ||||||||||||| ||| | || |||||| ||| | Sbjct 279695 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 279754 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | || || || | ||| || |||| ||||| | || Sbjct 279755 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 279814 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 ||||||| || || || ||||||||||| || || Sbjct 279815 CCCGTCAAGGTCTTCACGAAGATTTGCATTTTGAC 279849 >seq248 Length=567972 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||| ||||| | || | |||| || || ||| |||||| | ||||| ||||||| Sbjct 1454 AGCCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTAGATATTGTAATCGG 1513 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 || || | || || || ||||| ||||| ||||| || || |||| ||| || | Sbjct 1514 AGAGAGTGCAATCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTTGCTGATGGGGGGGTG 1573 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||||||||||| ||| ||| || | || | | || || || | ||||| Sbjct 1574 GAATGCCCTCTTTGTCCAGGATCTTCACCTTCACATTCTCGATGGTGTCACTGGGCTCCA 1633 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | |||| ||||| | || || || || || || || ||||||||||| || || Sbjct 1634 CCTCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATTTGCATTTTGAC 1688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429239750512199