Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3071 93.3 3e-14 seq2959 91.5 1e-13 seq3025 82.4 5e-11 seq1738 82.4 5e-11 >seq3071 Length=285302 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||| | || ||||| ||||| ||||| ||||| || || || || || | Sbjct 253380 ATGCAGATTTTCATGAAGACCCTTACGGGGAAAACCATCACGCTTGAGGTAGAACCCTCA 253321 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || || || || ||||| | || || ||||| Sbjct 253320 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 253261 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || ||||| ||||| || |||||||| | | ||||| || |||||| Sbjct 253260 CAGAAGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCATACTTTGTCTGACTACAAC 253201 Query 23791 ATACAAAAAGAGTCCA 23806 || ||||| ||||||| Sbjct 253200 ATCCAAAAGGAGTCCA 253185 >seq2959 Length=310600 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| || ||||| || ||| | ||||| || || ||||| || || || || || Sbjct 279846 AAAATGCAAATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTCGAGCCC 279787 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | | || || || || ||||| || | || || || Sbjct 279786 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCCGAC 279727 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || ||||| ||||| || |||||||| | |||||| | |||||| Sbjct 279726 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 279667 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || ||||||||||| Sbjct 279666 AACATCCAGAAAGAGTCCAC 279647 >seq3025 Length=599017 Score = 82.4 bits (90), Expect = 5e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||| | || || || || ||||| || || || || ||| Sbjct 118136 AATGCAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAG 118077 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | | || || || ||||| ||||| | || || || || Sbjct 118076 CGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCA 118017 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || ||||| || | ||||| | ||| ||||| Sbjct 118016 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAA 117957 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 117956 CATCCAGAAAGAGTCCAC 117939 >seq1738 Length=291085 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||| | ||| || || |||||||| || || || || Sbjct 19895 AACATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGAGCCC 19954 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || | | ||||| ||||| | || || || Sbjct 19955 AGTGACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAGGAAGGCATCCCACCTGA 20013 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||| | | |||||||| ||||| || ||||| || | || || | || || Sbjct 20014 CCAGCAGAGGCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGTCTA 20073 Query 23787 CAACATACAAAAAGAGTCCACATTACA 23813 ||| || |||||||||||||| || || Sbjct 20074 CAATATCCAAAAAGAGTCCACTTTGCA 20100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337768926918884