Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq19747 145 6e-30 seq24782 134 1e-26 seq1504 87.8 1e-12 >seq19747 Length=23491 Score = 145 bits (160), Expect = 6e-30 Identities = 129/159 (81%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 |||| ||| || |||||||| ||||| || || |||||||| ||||| |||||||| || Sbjct 2801 GTGATGTGTGCAATCATGTAGGTGAGCAGGGAATAGCTGGCAATGTTGAAGGGCACGCCC 2742 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC-GTCGCTCACGTA 29838 || ||||| || ||||||||||||||||||||||| || ||||| || | ||| || || Sbjct 2741 AGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTAGCT-ACATA 2683 Query 29839 AAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || ||||| | ||||||||| ||||| || ||||| || Sbjct 2682 GAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATTAG 2644 >seq24782 Length=13686 Score = 134 bits (148), Expect = 1e-26 Identities = 131/166 (79%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || |||| ||| || |||||||| ||||| || | |||||||| ||||| ||||| Sbjct 3256 TAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 3197 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC-GTCGC 29831 ||| || || || || || ||||||||||||||||||||||| || ||||| || || | Sbjct 3196 CACGCCCAGGCCAATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCAC 3137 Query 29832 TCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 | || || || ||||| | |||| |||| ||||| || ||||| || Sbjct 3136 T-ACATAGAATTGACAGAGGGCAAGGCAAGGAGGCAGTGCCATCAG 3092 >seq1504 Length=227043 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| |||||||| |||| || | |||||| | | ||||| |||||| || || Sbjct 174209 TTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 174268 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || | ||||| ||||| | |||||| |||||| Sbjct 174269 ATGGAGAACCAGGTTTTCCGGCCCATAATCACAAGGTTCTGTTTACCT 174316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405873999489778