Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4138 152 4e-32 seq686 131 1e-25 seq3167 120 3e-22 seq137 89.7 4e-13 >seq4138 Length=267950 Score = 152 bits (168), Expect = 4e-32 Identities = 297/433 (69%), Gaps = 13/433 (3%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||||||| || ||||| || || || |||||||| |||||||||||||| | |||||| Sbjct 162599 ACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAATGAAATATTTTCCATGAGGTCAAAC 162658 Query 4332 GGATTAGTTGCGTTGTAA-TGTTTTTCACACTTTAG----AGCTACAAGCAATCGGTCAG 4386 ||||| | | ||| || | || | | || ||| ||| | |||| | ||| | Sbjct 162659 GGATTTTCTACTTTGAAAATCTTGCTGA-ACCCTAGCTCCAGC-ATAAGC---CTGTCCG 162713 Query 4387 CTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTA 4446 || ||||| || ||||| |||| || |||||| || || || | ||||||| | Sbjct 162714 GCACGAATTCGATGTACTGCTTCATCAGGGTGCAGTTCATCCCGATGAGATTCACAGGCA 162773 Query 4447 GCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTT 4506 | || | || | |||||| || |||| | || || |||| || |||| || | Sbjct 162774 GGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCAC---TGATGATTTCTTGTACTC 162830 Query 4507 TATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCA 4566 | | || || || | ||| | || | |||| | || ||||| |||| | | Sbjct 162831 TTGGCTCCGACGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGACACAGGGTA 162890 Query 4567 AACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCT 4626 |||| || ||||||||||| || ||||| ||||| || | || ||||| | || | | Sbjct 162891 AACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTT 162950 Query 4627 TTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAA 4686 | || ||||| ||||| | ||||| || ||||| ||||| || |||||||| || |||| Sbjct 162951 TCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAA 163010 Query 4687 ACGCTACTAATCG 4699 | || || | ||| Sbjct 163011 AGGCCACAACTCG 163023 >seq686 Length=494244 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 31772 GTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGA 31831 || ||||| || ||||| || || | ||||| |||||||||||| || |||||| | Sbjct 395583 GTGAAAACAGACATTCAGATCGCTATTCCTTCTGGGTGCTACGGAAGAGTAGCTCTATGG 395524 Query 31832 TCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTAT 31891 ||||| |||||||| || ||||| || || || || || ||||| ||||| ||| ||| Sbjct 395523 TCTGGCTTGGCAGTAAAGCACTTCATAGATGTAGGAGCCGGTGTCATAGACAAAGATTAT 395464 Query 31892 AGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGGAGAAAAATCATACAGTA-TAAAAAA 31950 |||||||| ||||| ||||| ||||||| |||||| ||| | | | | ||||||| Sbjct 395463 AGAGGAAATGTTGGTGTTGTGCTGTTTAACTTTGGA-AAAGAGAAGTTTGAAGTAAAAAA 395405 Query 31951 GGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 || ||| || | || || || || || ||| Sbjct 395404 AGGTGATCGGATTGCACAGCTCATCTGTGAA 395374 >seq3167 Length=233518 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| || ||||| ||||||||||| || || || | ||||||||| | |||||||| | Sbjct 45203 CTTCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 45144 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||| || ||||| |||||||||||||| ||||| | |||||| ||||| ||||| | Sbjct 45143 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 45084 Query 4690 CTAC 4693 | || Sbjct 45083 CCAC 45080 Score = 100 bits (110), Expect = 2e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 ||||||||| || |||||||| || |||||||| ||||| ||||| |||||||| ||||| Sbjct 51900 TTGGTATTCAGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCCAACGAAATGTTTTC 51841 Query 4319 CATAAAATCAAACGGATT 4336 |||||||||||| ||||| Sbjct 51840 CATAAAATCAAAGGGATT 51823 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| || || || || ||||||||||||||||| || || | Sbjct 37406 AAAATCTT---ACCAAGTTTTCATTGACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 37350 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 || || ||||| |||| ||||| | |||||| || ||||||||||| | || || | Sbjct 37349 TGTGGGAGATAAAATACTTCTCGTCTGACTTAAGCTTGTTCCAGTGGGGGAGGTCCTTTG 37290 Query 5041 TTAAATCAAC 5050 || ||||| Sbjct 37289 ACAAGTCAAC 37280 >seq137 Length=869495 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || || ||||||||||||||||| ||||| || ||| Sbjct 367950 TCTTTAATGTAAGTGTCAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCA 368009 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | || ||||| || |||||||| Sbjct 368010 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTC 368053 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| || ||||| ||||| || | || ||||| | || | || || Sbjct 366587 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 366646 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||| ||||| || |||||||| || ||||| || Sbjct 366647 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGCC 366706 Query 4692 ACTAATCG 4699 || | ||| Sbjct 366707 ACAACTCG 366714 Score = 84.2 bits (92), Expect = 2e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 ||||| || ||||| || ||||| || ||||| || |||| || ||||||||||| | Sbjct 369134 TTTTCATTGACTATGCCATCACTCGCCGCAAAGAAAGCCAGGACGTGAGATATAAAATGT 369193 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCA 5057 ||||| || || || || |||||| | | ||| || | | || || || ||| Sbjct 369194 CTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCTCCTCA 369253 Query 5058 ACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATC 5117 | ||||| || || || || ||||| |||||||| ||| |||||| | || | || Sbjct 369254 GCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATG 369313 Query 5118 GGAA 5121 |||| Sbjct 369314 GGAA 369317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426745527739859