Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq19747 134 1e-26 seq24782 123 2e-23 seq11739 100 2e-16 >seq19747 Length=23491 Score = 134 bits (148), Expect = 1e-26 Identities = 125/159 (79%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 27214 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCG 27273 |||| ||| || |||||||| ||||| || || |||||||| ||||| ||||| || || Sbjct 2801 GTGATGTGTGCAATCATGTAGGTGAGCAGGGAATAGCTGGCAATGTTGAAGGGCACGCCC 2742 Query 27274 AGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA 27333 || ||||| || || ||||||||||||||||| || || ||||| |||| ||| || Sbjct 2741 AGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTAGCTACATAG 2682 Query 27334 AACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || ||||| | ||| ||||| ||||| || ||||| ||| Sbjct 2681 AATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATTAGG 2643 >seq24782 Length=13686 Score = 123 bits (136), Expect = 2e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || |||| ||| || |||||||| ||||| || | |||||||| ||||| ||||| Sbjct 3256 TAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 3197 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCT 27326 || || || || || || || ||||||||||||||||| || || ||||| |||| Sbjct 3196 CACGCCCAGGCCAATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCAC 3137 Query 27327 TACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||| || || ||||| | ||| |||| ||||| || ||||| ||| Sbjct 3136 TACATAGAATTGACAGAGGGCAAGGCAAGGAGGCAGTGCCATCAGG 3091 >seq11739 Length=28935 Score = 100 bits (110), Expect = 2e-16 Identities = 226/337 (67%), Gaps = 2/337 (1%) Strand=Plus/Plus Query 27448 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCT 27507 ||||||||||| | || || | | |||| ||| ||| || |||| |||||| Sbjct 18405 TTTTGCAGCTGGCCTACTCCTTGACTCAAGTAATCTGAATCCATATCTTTGTAGTCTGCT 18464 Query 27508 CCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TC 27566 | ||||| ||| | ||||| ||||| || || |||| || || || | | |||| Sbjct 18465 ACAAAATGTCTCTAATGGAAACCGTAAACTGGGCCCAACTCCCCTTCCTGTC-GTGCAGA 18523 Query 27567 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 27626 ||| ||| | |||| | || | || ||| || ||||| |||||||| | || || || Sbjct 18524 GAATCCCATGCTGTCTAGAATATGTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTT 18583 Query 27627 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 27686 || || ||||| | ||||||| || ||| |||||||||| ||||| || || Sbjct 18584 GGAGGCCAGTTCTTTAGCAGTTGTGGATCCCTTGATAAACCACAGCACCTCCTTCAAAAC 18643 Query 27687 GGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCT 27746 ||||||| || || | ||||| |||| || ||||| | | | ||| ||| Sbjct 18644 ACCCTTCCAGAACACTCGTTTGGTTATGAGCAGAGGAAATTCATCTCTCAGGTTGTATGG 18703 Query 27747 GGCCTGAGAACCAAACACGGACAAGACTCCCGTGCCC 27783 ||||| || ||||| |||||| || |||||| Sbjct 18704 CGCCTGCATGCCTAACACCGACAAGGTGCCAGTGCCC 18740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369244099672913