Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq4138 190 3e-43 seq686 140 5e-28 seq9705 113 6e-20 >seq4138 Length=267950 Score = 190 bits (210), Expect = 3e-43 Identities = 338/488 (69%), Gaps = 10/488 (2%) Strand=Plus/Plus Query 47801 GTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGATA 47857 |||| |||| || | ||| ||| ||| || | ||||| || |||| | ||||| Sbjct 162532 GTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCTCCATCCTCTGATA 162591 Query 47858 TTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATAAA 47917 || ||||| || ||||| || || || || || ||||| ||||| ||||||||||| | Sbjct 162592 CTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAATGAAATATTTTCCATGAG 162651 Query 47918 ATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTATC 47977 ||||| ||||| || | || |||| || | || |||| || || || || || Sbjct 162652 GTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTGTC 162711 Query 47978 TGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGG 48037 | |||||||| || || ||||||| || ||||| || || || || || || Sbjct 162712 CGGCACGAATTCGATGTACTGCTTCATCAGGGTGCAGTTCATCCCGATGAGATTCACAGG 162771 Query 48038 TAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTAC 48097 || |||||||| |||||||| || || | | || ||| | ||| || | ||| Sbjct 162772 CAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCACTGATGATT-TC--TTGTAC 162828 Query 48098 CGTTTCCTC--ACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCACAA 48155 || ||| || || ||| || || | ||||| | || ||||| |||| Sbjct 162829 TCTTGGCTCCGACGGCTTGTGTAC--CAGGTGCCTGAACATCAGGCAGGCAAAGACACAG 162886 Query 48156 TGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCA 48215 | | ||| |||||||| ||||| | ||||| |||||||| || || ||||| ||||| Sbjct 162887 GGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCC 162946 Query 48216 CGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCC 48275 ||||| |||||||| ||||||| || ||||| ||||| ||||| || |||||||| || Sbjct 162947 CGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCA 163006 Query 48276 GCAAATGC 48283 ||||| || Sbjct 163007 GCAAAGGC 163014 >seq686 Length=494244 Score = 140 bits (154), Expect = 5e-28 Identities = 255/363 (70%), Gaps = 19/363 (5%) Strand=Plus/Plus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||||| || |||||||| ||| || |||| ||||| Sbjct 395293 TCCAGTGGAGCCAAAACCTCCTGAGC-TC-CTTTCAGTGTTATCCAGTGATTCAACTTCT 395350 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || |||||| | || |||| | |||| || || || || | |||||| | ||| Sbjct 395351 TCTAAGTCTGGATAAAAAATTCGTTCACAGATGAGCTGTGCAATCCGATCACCTTTTTTT 395410 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||||||| || | ||| | || |||| | |||||||||||| Sbjct 395411 ACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAACATTTCCTCTATAATCT 395470 Query 46054 TCATCTATTACTCCCCCTCCCACATCGAT-ACCT--TTTAGAGACAGTCCAGATCTAGGA 46110 | ||||| || || |||| ||||| || | | |||| | || ||||| | || Sbjct 395471 TTGTCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCATAGA 395530 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 |||| |||||| || ||||| || |||| ||| |||| |||||||| | ||| Sbjct 395531 GCTACTCTTCCGTAGCACCCAGAA----GGAATAGCGATCTGAATGTCTGTTTTCA-CAA 395585 Query 46167 TCTCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224 | ||||||||| || || || ||||| || || |||| || | ||||| ||||| Sbjct 395586 T-GGCTTTCTCCATGGGTGGTATTGTATAATCATAGGCACCATACAGGTCATAGCCTGCA 395644 Query 46225 GCA 46227 ||| Sbjct 395645 GCA 395647 >seq9705 Length=66704 Score = 113 bits (124), Expect = 6e-20 Identities = 122/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 78378 CTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAAC 78437 ||||||| ||| || | || || ||||| || | || ||||| ||||| |||||| Sbjct 13139 CTAGACAGTTGTGGACGGTTGGTCCCGGCATTGAAGAGAGTTGGAGAGGCATGAGTAAAC 13080 Query 78438 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATT 78497 || || |||||||| || |||||||||||||| || | || || || || ||||| Sbjct 13079 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATGGCAGCGTCAATATCTTCTTTGTGAATC 13020 Query 78498 CCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACC 78539 || || | ||| | ||||||||||||||| ||||||||| || Sbjct 13019 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCAGCC 12978 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| ||||| |||||| ||| | || || || || || || | Sbjct 28164 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 28105 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||||||||||||||| ||||| ||||| ||||| || | || |||| Sbjct 28104 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCGGCCATCTTGAGAACAGTCT 28045 Query 76969 TTTGAGGAATTTCCCA 76984 | |||| |||||||| Sbjct 28044 TCTGAGAGATTTCCCA 28029 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| || || || ||||| || |||||||| || || || | || Sbjct 25039 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 24980 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 24979 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 24920 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 24919 TTTCTTATACCAT 24907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763 ||||||||| | ||| ||| | || ||| || ||||| || || || |||||||| | Sbjct 20455 CTACCTCATCTTTGCTGGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGG 20396 Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAG 77823 ||||||| || || ||||||||||| ||| || || || || || || || |||| | Sbjct 20395 TGCCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGG 20336 Query 77824 TCCCGGTTTCAATCTGTGATTCGATAAT 77851 | || || || ||||||| || || || Sbjct 20335 TACCTGTCTCTGTCTGTGACTCAATGAT 20308 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| ||||||| ||||| || |||||||| |||||||||||| Sbjct 19046 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 18987 Query 77985 CAGTC 77989 ||||| Sbjct 18986 CAGTC 18982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694161492058720