Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4138 201 2e-46 seq137 120 4e-22 seq9705 114 2e-20 seq3167 98.7 1e-15 >seq4138 Length=267950 Score = 201 bits (222), Expect = 2e-46 Identities = 326/465 (70%), Gaps = 3/465 (1%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| || |||| | || || || || || || ||||| || || || || || || Sbjct 162568 TGACATCACCTCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCC 162627 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 ||| ||||| ||||||||||| | ||||||||||| || || |||| || | || Sbjct 162628 TTCTAATGAAATATTTTCCATGAGGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAA 162687 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 |||| || || || || || | |||||||| || ||| ||||||| || Sbjct 162688 CCCTAGCTCCAGCATAAGCCTGTCCGGCACGAATTCGATGTACTGCTTCATCAGGGTGCA 162747 Query 46503 ATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGAC 46562 ||||| || ||||| || || || || |||||||| |||||||| || || | | || Sbjct 162748 GTTCATCCCGATGAGATTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCAC 162807 Query 46563 AGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAA 46622 ||| | ||| | || ||| ||| || ||| || || | || || | || Sbjct 162808 TGCA-CTGATGATTTCT-TGT-ACTCTTGGCTCCGACGGCTTGTGTACCAGGTGCCTGAA 162864 Query 46623 CATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAA 46682 ||| | || ||||| |||| | | || |||||||| ||||| | ||||| ||||| Sbjct 162865 CATCAGGCAGGCAAAGACACAGGGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAA 162924 Query 46683 TGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGA 46742 ||| || |||||||| ||||| || || |||||||| ||||| | || ||||| ||||| Sbjct 162925 TGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGCAAAAGAGCCAGA 162984 Query 46743 AAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCC 46787 ||||| || ||||||||||| || || || |||| || ||||| Sbjct 162985 GAAGAAGATCCCTTCTACAGCAGCAAAGGCCACAACTCGTTCTCC 163029 >seq137 Length=869495 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||||| |||||||| || |||||||| ||||| || || ||| Sbjct 366587 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 366646 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||| ||||| || ||||||||||| || || || Sbjct 366647 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGCC 366706 Query 46774 ACAAGTCTCTCTCC 46787 |||| || ||||| Sbjct 366707 ACAACTCGTTCTCC 366720 >seq9705 Length=66704 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| || || || ||||| || |||||||| || || || | || Sbjct 25039 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 24980 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 24979 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 24920 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 24919 TTTCTTATACCAT 24907 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| ||||| |||||| ||| | || || || || || || | Sbjct 28164 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 28105 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| ||||||||||||||||| ||||| ||||| ||||| || | || |||| Sbjct 28104 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCGGCCATCTTGAGAACAGTCT 28045 Query 75564 TTTGAGGAATTTCCCA 75579 | |||| |||||||| Sbjct 28044 TCTGAGAGATTTCCCA 28029 Score = 109 bits (120), Expect = 8e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 ||||||| ||| || | || || ||||| || | || ||||| |||||||| ||| Sbjct 13139 CTAGACAGTTGTGGACGGTTGGTCCCGGCATTGAAGAGAGTTGGAGAGGCATGAGTAAAC 13080 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 || || |||||||| || |||||||||||||| | || || ||||| || ||||| Sbjct 13079 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATGGCAGCGTCAATATCTTCTTTGTGAATC 13020 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 || |||| || | ||||||||||||||| |||| ||| Sbjct 13019 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTC 12982 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || |||| || Sbjct 8320 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTGGAGACAGCAATCCTTGCTGCTAAGATG 8261 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | |||||| |||| || ||| | || || || | |||||| | | Sbjct 8260 GCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCAGT 8201 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || ||||| | || || ||||| || |||||||||| Sbjct 8200 TCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCATGG 8155 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||| Sbjct 19056 ATATAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 18997 Query 76570 CATCAATGACCACTC 76584 |||||||||||| || Sbjct 18996 CATCAATGACCAGTC 18982 >seq3167 Length=233518 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| || |||||||| ||||||| ||||| ||||||||| ||||| |||||| | Sbjct 29486 TACCTCTTCTGCGGTCCAGAAAGACGCCTGTGCTTGTTTATACATCTTCCAAATATCAGG 29427 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 || ||||||||||| |||||||| Sbjct 29426 GTACTGGATCGGAAAGATAACAAA 29403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712413752919360