Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_031224.1 Length=59443 Score E Sequences producing significant alignments: (Bits) Value seq19747 102 3e-17 seq24782 82.4 3e-11 >seq19747 Length=23491 Score = 102 bits (112), Expect = 3e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAAGGTAAGCTTTCG 52169 ||||| || |||| |||||| | || | ||||||||||||||| | || |||| || Sbjct 2647 ATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCTAATGGGGAGCTGTCT 2706 Query 52170 TGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAGC 52229 ||||| | || ||| |||| | || ||| | ||||||| || || |||||||||||| Sbjct 2707 TGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTCAACATTGCCAGC 2766 Query 52230 TATTCCTTGCTGACGCATCTGATTGC 52255 |||||| |||| || | ||||||| Sbjct 2767 TATTCCCTGCTCACCTACATGATTGC 2792 >seq24782 Length=13686 Score = 82.4 bits (90), Expect = 3e-11 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 52110 ATGGCGTTGGCTCCCTGCCATACACTATTCCAATTCTATGTAGCTGAA-GGTAAGCTTTC 52168 ||||| || |||| |||| | | || | ||||||||||||| |||| || |||| || Sbjct 3095 ATGGCACTGCCTCCTTGCCTTGCCCTCTGTCAATTCTATGTAG-TGAATGGGGAGCTGTC 3153 Query 52169 GTGCCATTTGTATCAGCGGTCTGCCGACATGTTCTTGGGCGTTCCGTTTAACATTGCCAG 52228 ||||| | || ||| |||| | || || | ||||||| || || ||||||||||| Sbjct 3154 TTGCCAGCTCTACCAGAGGTCAGGAGATATTGGCCTGGGCGTGCCCTTCAACATTGCCAG 3213 Query 52229 CTATTCCTTGCTGACGCATCTGATTGC 52255 |||| || |||| || | ||||||| Sbjct 3214 CTATGCCCTGCTCACCTACATGATTGC 3240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 189964116504030