Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq3071 127 5e-24 seq1738 120 7e-22 seq2959 116 9e-21 seq5954 114 3e-20 seq3025 109 1e-18 seq22505 105 2e-17 seq5999 105 2e-17 seq650 96.9 8e-15 seq5338 95.1 3e-14 >seq3071 Length=285302 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||||||| | ||||| |||||||||||||| || | ||||| Sbjct 253163 AGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGG 253222 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| ||| ||||||| || | | ||||||||| Sbjct 253223 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGAGGAATTCCTTCC 253282 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | |||| ||||||| ||||| ||||| || Sbjct 253283 TTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCTACCTCAAGCGTG 253342 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || ||||||| ||| | |||||| Sbjct 253343 ATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 253380 >seq1738 Length=291085 Score = 120 bits (132), Expect = 7e-22 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || | ||| |||||||||||||| ||||| ||| | || | ||||| Sbjct 20109 AGCACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCCGGCCATCC 20050 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || || || |||||||||||||| | | ||| |||||||| ||| Sbjct 20049 TCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 19990 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || |||||||| || Sbjct 19989 TGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATG 19933 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||| | || |||||||| |||| |||||| || Sbjct 19932 GTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 19895 >seq2959 Length=310600 Score = 116 bits (128), Expect = 9e-21 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | |||||| || || || || |||||||| |||||||||||||| | | ||| Sbjct 279622 CCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGT 279681 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| || | ||||||||| | | ||| || Sbjct 279682 GCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCC 279741 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 || || || || || || || || |||| | | |||| ||| ||| || || Sbjct 279742 CTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCGACCTC 279798 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCTT 152113 || || || || |||||||| | ||||||||||||| |||||||| |||| Sbjct 279799 CAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATTTGCATTTTGACCTT 279852 >seq5954 Length=158713 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||| ||| || ||||| | |||||||||||| || | ||||| | Sbjct 21669 AGTCTCAACACCAGATAAAGGGTGGACTCCTCTTGGATGTTGTAGTCAGGCAAAGTACAG 21610 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || | |||||| ||||||||| | || | || |||||| || Sbjct 21609 CCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCAGATCAGGAGAAATTCCTCCC 21550 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || |||||| | |||| ||||| | ||| || || || || Sbjct 21549 TTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTAAGGGCTCAACCTCGAGCGTG 21490 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | || ||||||||||| | |||||| Sbjct 21489 ATGGTTTTCCCTGGAAGGGTCTTCACGAAAATCTGCAT 21452 >seq3025 Length=599017 Score = 109 bits (120), Expect = 1e-18 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||| || || || || |||||||| ||||||||||| |||| | || Sbjct 117914 CCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGT 117973 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || || || || ||||| |||||||||||||| | | ||| || Sbjct 117974 GCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 118033 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || ||||| |||| | | |||| ||| || || || Sbjct 118034 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAG 118093 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || | || |||||||||| ||||||| Sbjct 118094 GGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCATT 118136 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||| || || || || |||||||| ||||||||||| |||| | || Sbjct 115656 CCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGT 115715 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || || || || ||||| |||||||||||||| | | ||| || Sbjct 115716 GCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCC 115775 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 |||||| || || || || ||||| |||| | | |||| Sbjct 115776 TTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTC 115817 >seq22505 Length=6242 Score = 105 bits (116), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || | ||| |||||||| |||||||||||||||| | || | ||||| Sbjct 3196 AGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCC 3255 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| || || |||||||| ||||| | | ||| |||||||| ||| Sbjct 3256 TCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCT 3315 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||| | ||| | | | || ||| || || |||||||| || Sbjct 3316 TGGATCTTGGCCTTGAAATTCTTGATGGTATC---ACTGGGCTAGACCTCAAGAGTGATG 3372 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||| | || |||||||| || | |||||| || Sbjct 3373 GTCTTGCCCATCAGGGTCTTCACAAATATCTGCATGTT 3410 >seq5999 Length=119422 Score = 105 bits (116), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || | ||| |||||||| |||||||||||||||| | || | ||||| Sbjct 3047 AGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCC 2988 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| || || |||||||| ||||| | | ||| |||||||| ||| Sbjct 2987 TCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCT 2928 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||| | ||| | | | || ||| || || |||||||| || Sbjct 2927 TGGATCTTGGCCTTGAAATTCTTGATGGTATC---ACTGGGCTAGACCTCAAGAGTGATG 2871 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || |||||| | || |||||||| || | |||||| || Sbjct 2870 GTCTTGCCCATCAGGGTCTTCACAAATATCTGCATGTT 2833 >seq650 Length=610773 Score = 96.9 bits (106), Expect = 8e-15 Identities = 156/225 (69%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||||||| || ||||| ||||||||| |||| || | ||||| | Sbjct 359080 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGCTGTAGTCAGACAAAGTACGG 359139 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| ||||||||||| || | | ||||||||| Sbjct 359140 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 359199 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACG-------CTGTCTGAACTCTCTACTTC 152059 || || || || || |||||| | | | | |||| || || || | Sbjct 359200 TTATCCTGGATCTTGGCCTTGACATTTTTTCTGTCATTTAGTGTCCGAGGGTTCAACCTT 359259 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || | || ||||| ||||| || ||||||||||| | |||||| Sbjct 359260 GAGCATGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 359304 >seq5338 Length=92157 Score = 95.1 bits (104), Expect = 3e-14 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 151894 GGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTT 151953 |||| || || || || |||||||| |||||||||||||| | | ||| | ||||||| Sbjct 52159 GGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTT 52218 Query 151954 CTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | || || || || ||||| || | ||||||||| | | ||| || || || || | Sbjct 52219 CCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCT 52278 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAG 152070 | || || || || |||| | | |||| ||| | | || || || || || | Sbjct 52279 GGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTCGGCGCCACCTCCAGGGTGATGG 52335 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 |||||| || || ||||||| ||||| |||||||| Sbjct 52336 TTTTGCTGGTCAGGGTCTTCATGAAGATTTGCATTTT 52372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152957113569833