Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3071 143 2e-29 seq2959 129 4e-25 seq3025 127 1e-24 seq650 123 2e-23 seq248 116 3e-21 seq5338 111 1e-19 seq5954 109 4e-19 seq1738 98.7 7e-16 seq22505 96.9 2e-15 seq5999 96.9 2e-15 >seq3071 Length=285302 Score = 143 bits (158), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GT-TGG 44176 |||||||||||||| ||||| || |||||||||||||||||| || | | || ||| Sbjct 253163 AGTCTCAACACCAGATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTATGG 253222 Query 44177 CGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCT 44236 | | || ||||||||||| || |||||||||| ||||||||| | ||| | ||| Sbjct 253223 C---CATCTTCCAGCTGCTTGCCAGCAAAGATCAGCTTCTGCTGATCAGGAGGAATTCCT 253279 Query 44237 TCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACC 44296 ||||| ||| ||||| ||| | || |||| ||||| | || ||| ||||| | | Sbjct 253280 TCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGTTCTACCTCAAGC 253339 Query 44297 GTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || ||||| |||||||||| ||| || ||||| Sbjct 253340 GTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 253380 >seq2959 Length=310600 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| ||| || |||||||||||||| | || ||| | || ||| Sbjct 279635 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 279694 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | || || || ||| Sbjct 279695 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 279754 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | |||||||| || || ||||||| || || ||||| Sbjct 279755 ATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTT 279813 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | ||||||||||||||||||||| Sbjct 279814 GCCCGTCAAGGTCTTCACGAAGATTTGCAT 279843 >seq3025 Length=599017 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||||| || ||| ||| || ||||||||||| || Sbjct 117905 CATCCCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 117964 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 117965 GGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGG 118024 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| || | | |||| | ||||||||| || | Sbjct 118025 GGGGATGCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGCTGGGCT 118083 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||| || || ||||| || || | ||| ||||||||||| ||||| Sbjct 118084 CGACCTCCAGGGTGATGGTCTTACCAGTTAAGGTTTTCACGAAGATCTGCAT 118135 Score = 100 bits (110), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || || || | || |||||||| || ||| ||| || ||||||||||| || Sbjct 115647 CATCCCACCCCTGAGGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTC 115706 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || |||||||||| | |||||| || | Sbjct 115707 GGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGG 115766 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||||| ||| ||||| || | | |||| | ||||||||| || | Sbjct 115767 GGGGATGCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCGATGGTGTCGCTGGGCT 115825 Query 44286 CCACCTCCACCGTAATCGTCTT 44307 | ||||||| || || ||||| Sbjct 115826 CGACCTCCAGGGTGATGGTCTT 115847 >seq650 Length=610773 Score = 123 bits (136), Expect = 2e-23 Identities = 163/225 (72%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||||||||| ||||| ||| ||||||||||||| |||| || | | || Sbjct 359080 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGCTGTAGTCAGACAAAGTACGG 359139 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239 | || ||||||||||| || |||||||||| | ||||||||| | ||| | |||||| Sbjct 359140 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 359199 Query 44240 TTTTCCGTTATCTTCTGCTTCA-ATGT------TCCTATGGTGTCGGCGGATTCCACCTC 44292 || ||| ||||| ||| | || | || | | ||||| | || ||| |||| Sbjct 359200 TTATCCTGGATCTTGGCCTTGACATTTTTTCTGTCATTTAGTGTCCGAGGGTTCAACCTT 359259 Query 44293 CACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | | | || || || ||||| |||||||||||||| || ||||| Sbjct 359260 GAGCATGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 359304 >seq248 Length=567972 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| || | | |||||||| || ||| ||| || | ||| |||||||||| | Sbjct 1456 CCACCTCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTAGATATTGTAATCGGAG 1515 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || || || ||||||||||| || |||||||| | |||| || | || Sbjct 1516 AGAGTGCAATCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTTGCTGATGGGGGGGTGGA 1575 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || || || ||| |||||| ||||| | | |||||||| || |||||| Sbjct 1576 ATGCCCTCTTTGTCCAGGATCTTCACCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 1635 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || ||||||||||||||||||||||| Sbjct 1636 TCCAGGGTGATGGTCTTGCCGGTTAGGGTCTTCACGAAGATTTGCAT 1682 >seq5338 Length=92157 Score = 111 bits (122), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| ||| || |||||||||||||| | || ||| | || ||| Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||| | |||||||| || | || | || || || ||| Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTG----TCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| |||| | |||| | |||||| |||||| ||||||||| || || | Sbjct 52281 ATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTCGGCG----CCACCTCCAGGGTGATGG 52335 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || | || |||||||||| |||||||||||| Sbjct 52336 TTTTGCTGGTCAGGGTCTTCATGAAGATTTGCAT 52369 >seq5954 Length=158713 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGCGAGTTGGCG 44178 |||||||||||||| | ||| ||| ||||| |||||||||||| || ||| | | | Sbjct 21669 AGTCTCAACACCAGATAAAGGGTGGACTCCTCTTGGATGTTGTAGTCAGGCAAAGTACAG 21610 Query 44179 CTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | | || ||||||||||| || | ||||||| | |||| |||| | || | ||| | Sbjct 21609 C-CATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCAGATCAGGAGAAATTCCTCC 21551 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| ||| ||||| ||| | || |||| ||||| || || ||||| | ||| Sbjct 21550 CTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCTAAGGGCTCAACCTCGAGCGT 21491 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || || | |||||||||||||| || ||||| Sbjct 21490 GATGGTTTTCCCTGGAAGGGTCTTCACGAAAATCTGCAT 21452 >seq1738 Length=291085 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| | ||| ||| |||||||| ||||| ||| || || | || || Sbjct 20107 CACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCCGGCCATCCTC 20048 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || ||||| |||| | |||||| || | || | |||||||| || Sbjct 20047 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 19988 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | |||||||| || || ||||| | || || ||||| Sbjct 19987 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 19928 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||| | ||||||||||| ||||| |||||| || Sbjct 19927 GCCCATCAGGGTCTTCACAAAGATCTGCATGTTG 19894 >seq22505 Length=6242 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| | ||| ||| || |||||||||||||||| || || | || || Sbjct 3198 CACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCCTC 3257 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| |||||||| |||| | ||| || || | || | |||||||| || Sbjct 3258 CAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTG 3317 Query 44248 TATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| || || | ||||| | || || |||| Sbjct 3318 GATCTTGGCCTTGAA-ATTCTTGATGGTATCACTGGGCTAGACCTCAAGAGTGATGGTCT 3376 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | ||| | ||||||||||| || || |||||| || Sbjct 3377 TGCCCATCAGGGTCTTCACAAATATCTGCATGTTG 3411 >seq5999 Length=119422 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||||||| | ||| ||| || |||||||||||||||| || || | || || Sbjct 3045 CACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGACAGGGTCCGGCCATCCTC 2986 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| |||||||| |||| | ||| || || | || | |||||||| || Sbjct 2985 CAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTG 2926 Query 44248 TATCTTCTGCTTCAATGTTCCT-ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||| || ||| | ||||| || || | ||||| | || || |||| Sbjct 2925 GATCTTGGCCTTGAA-ATTCTTGATGGTATCACTGGGCTAGACCTCAAGAGTGATGGTCT 2867 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 | ||| | ||||||||||| || || |||||| || Sbjct 2866 TGCCCATCAGGGTCTTCACAAATATCTGCATGTTG 2832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359734075922991