Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq5571 132 7e-26 seq3050 129 8e-25 >seq5571 Length=148922 Score = 132 bits (146), Expect = 7e-26 Identities = 201/286 (70%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || |||||| ||||||||||| | || | |||| ||| Sbjct 104476 AAGGGACAGCCCTTCACATTATTACAGATGAGAGACTGAATGGAGGCAGTGTTGATAATC 104417 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| ||||| || || ||||| |||||||||||| || || |||||| Sbjct 104416 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAGATGGGA 104357 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| || ||| Sbjct 104356 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 104297 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| ||||||||||| | | | | || ||||||| || || | | Sbjct 104296 ATAGCATCTGGACGTGGCTTTTCCACAAGCAGGGCAGGATAGAGCTCCATGGCATCAATG 104237 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | || || || || ||||| ||||||| Sbjct 104236 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCTG 104191 Score = 116 bits (128), Expect = 5e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||| ||||| | || |||||| | ||| ||| | || Sbjct 101598 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 101539 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| |||||||| || ||| ||||||| |||||||| | || | ||| || ||||| Sbjct 101538 AAACTGATGCGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTCGAGCCTTGAGGATC 101479 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 ||| |||| | |||| |||||| ||| |||| ||| Sbjct 101478 AGGAATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAAC 101440 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 9909 CACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGT 9968 ||||||| || || | ||||| || || |||| | || ||||| || || | || Sbjct 100855 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCGGCTACAGGAGGAAGTGCTCTGGTGT 100796 Query 9969 AATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGG 10028 | |||||||| |||||||| ||||||||| || ||| | |||| | ||||||| | | Sbjct 100795 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACGTTGTAAGTTG 100736 Query 10029 GAGGGCTGTCAATCAAATCGGATCT 10053 | || ||||||||||||| ||||| Sbjct 100735 GCGGACTGTCAATCAAATGTGATCT 100711 >seq3050 Length=242780 Score = 129 bits (142), Expect = 8e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| ||||| || || ||||| |||||||||||||| ||| | || || || ||| || Sbjct 71588 GAAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATT 71647 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 | | | ||| || |||||||| || |||||||| | ||| | |||||||| || ||||| Sbjct 71648 CCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGAT 71707 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || |||||| || |||||||| | || || | ||| | ||| | || |||| ||| Sbjct 71708 GGAGTTGGGCTGGCACTTTTCCAGAAGCAACCCTGGGTAGAACTCTAGGGCATCGATGTC 71767 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || | || || || |||||||| ||||||| Sbjct 71768 ACCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCTG 71811 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/166 (73%), Gaps = 6/166 (4%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||||||| ||| || || Sbjct 78835 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCGTCATCCCAGGTGGGGTGC 78894 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACAT- 9350 || | ||||| | |||||||| | ||||||||| | |||||||| |||| |||| Sbjct 78895 TCCTCCTTCAGCAGGTCGCACACGCGGTTGTGTTCACGCAGCCAGATCGTGG---ACATG 78951 Query 9351 --CATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||| ||||| || | || ||||| |||| || || || |||| Sbjct 78952 ACCATCAGCCCTGGGAGCAACCCAAACACCTCCTGGCCCACGGCCA 78997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716353273833920