Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2959 165 2e-35 seq5338 154 4e-32 seq3025 149 2e-30 seq248 132 1e-25 seq5954 131 4e-25 seq3119 118 3e-21 seq650 118 3e-21 seq1738 113 1e-19 seq17328 98.7 2e-15 >seq2959 Length=310600 Score = 165 bits (182), Expect = 2e-35 Identities = 172/223 (77%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 177909 AAGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAG 177968 ||||| ||||||| |||| |||||||| || | || || || || |||||||| ||| Sbjct 279852 AAGGTCAAAATGC---AAATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAG 279796 Query 177969 GTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAA 178026 || || || ||| |||||||||||||||| || ||||| ||||| ||||| || | Sbjct 279795 GTCGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCA 279738 Query 178027 TCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTC 178086 |||| || |||||||| ||||| ||||| || || || ||||| |||||||| | |||| Sbjct 279737 TCCCCCCCGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTC 279678 Query 178087 TTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || | ||||| ||| |||| ||||| || || ||||| || || Sbjct 279677 TTTCTGATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 279635 >seq5338 Length=92157 Score = 154 bits (170), Expect = 4e-32 Identities = 166/217 (76%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||| |||| || || || | ||||| |||||||| ||||||| Sbjct 52372 AAAATGC---AAATCTTCATGAAGACCCTGACCAGCAAAACCATCACCCTGGAGGTGGC- 52317 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || || |||||||||||||||| || ||||| ||||| ||||| || ||||| | Sbjct 52316 -GCCGAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCC 52258 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| ||||| ||||| || || || ||||| |||||||| | |||||| | | Sbjct 52257 CCGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTG 52198 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||| |||| ||||| || || ||||| || || Sbjct 52197 ATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGT 52161 >seq3025 Length=599017 Score = 149 bits (164), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||||||||| | || || || || |||||||| ||||| || || ||| Sbjct 118132 CAGATCTTCGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGA--GCCCAGCG 118075 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| ||||| || ||||||| Sbjct 118074 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGC 118015 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| || ||||| | || || |||| || ||| Sbjct 118014 AGAGGCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACA 117955 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAG 178141 |||| ||||| || || ||||| || || || | ||||| Sbjct 117954 TCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAG 117915 Score = 131 bits (144), Expect = 4e-25 Identities = 146/193 (76%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 177951 AAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGA 178008 || || |||||||| ||||| || || ||| ||||||||||||||||||| |||| Sbjct 115847 AAGACCATCACCCTGGAGGTCGA--GCCCAGCGACACCATCGAGAACGTCAAGGCCAAGA 115790 Query 178009 TTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGC 178068 | |||||||| ||||| ||||| || |||||||| | || ||||| || || || |||| Sbjct 115789 TCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCAGGCAAGCAGC 115730 Query 178069 TCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 | || ||||| | || || |||| || ||| |||| ||||| || || ||||| || | Sbjct 115729 TGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGG 115670 Query 178129 TTTTGAGACTCAG 178141 | || | ||||| Sbjct 115669 TCCTGCGCCTCAG 115657 >seq248 Length=567972 Score = 132 bits (146), Expect = 1e-25 Identities = 172/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| || || || || || || |||||||| |||| Sbjct 1690 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTAACCGGCAAGACCATCACCCTGGAGG 1634 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| ||||||||||||| || || ||||| | ||||||||| || || Sbjct 1633 TGGA--GCCCAGTGACACCATCGAGAATGTGAAGGTGAAGATCCTGGACAAAGAGGGCAT 1576 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || ||| || | ||| ||||| || || || ||||| ||||||| | ||||| Sbjct 1575 TCCACCCCCCCATCAGCAACTCATCTTTGCTGGCAAGCAGCTGGAAGATGATTGCACTCT 1516 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||| || || | ||||| || || ||||| || || | | |||||| Sbjct 1515 CTCCGATTACAATATCTAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGA 1461 >seq5954 Length=158713 Score = 131 bits (144), Expect = 4e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || |||| ||||| ||||| |||||||| || || |||| Sbjct 21455 CAGATTTTCGTGAAGACCCTTCCAGGGAAAACCATCACGCTCGAGGTTGAGCCCTTAGAC 21514 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| ||||| || | |||||| |||| || | ||| Sbjct 21515 ACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGGAGGAATTTCTCCTGATCTGCAG 21574 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGT 178102 | || |||||| | || || ||||| |||||||| | ||| ||||| || || ||| | Sbjct 21575 AGGCTGATCTTCCCTGGCAAGCAGCTGGAAGATGGCTGTACT-TTGCCTGACTACAACAT 21633 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| | || || || || |||| || |||||||| Sbjct 21634 CCAAGAGGAGTCCACCCTTTATCTGGTGTTGAGACT 21669 >seq3119 Length=146950 Score = 118 bits (130), Expect = 3e-21 Identities = 147/198 (74%), Gaps = 9/198 (5%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| |||||||| || || || | || || |||||||| ||||||| || ||| Sbjct 114469 CAAATCTTCGTGAAGACCCTGACCAGCAAGACCATCACCCTGAAGGTGGA--GCCCAGTG 114412 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATC-CCTCCGGACCAG 178040 | ||||||||||| ||||| ||||| ||||||||||| || | | ||||| ||||| Sbjct 114411 ATACCATCGAGAATGTCAAGACCAAGATCCAGGACAAAGAGGGCACCTCCTCCACACCAG 114352 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGG----ACTCTTGCCGATTA 178096 || | ||| ||||| | | |||||||| ||||||||| || |||||| | | || Sbjct 114351 CAGCAACTCATCTTGGAGGACAAACAGCTGGAAGATGGATGGCCACACTCTTTCTAAATA 114292 Query 178097 TAACGTCCAAAAAGAATC 178114 ||| |||| ||||| || Sbjct 114291 CAACATCCAGAAAGAGTC 114274 >seq650 Length=610773 Score = 118 bits (130), Expect = 3e-21 Identities = 159/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || || || ||||| |||| ||| |||| ||| ||| ||| Sbjct 359301 CAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCATGCTCAAGGTTGAACCCTCGGAC 359242 Query 177984 AC-------CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGA 178036 || || | || ||||| ||||| ||||| || |||||||| ||||| || Sbjct 359241 ACTAAATGACAGAAAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 359182 Query 178037 CCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTA 178096 ||||| | || ||||| || || || ||||| |||||||| | ||| | | || || Sbjct 359181 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTA 359122 Query 178097 TAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | | ||||||| || || || || ||||| || |||||||| Sbjct 359121 CAGCATCCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACT 359080 >seq1738 Length=291085 Score = 113 bits (124), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || | || || || ||||| || ||||| || || ||| Sbjct 19901 CAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 19958 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || ||||| ||||| ||||| || ||||||| Sbjct 19959 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAGC 20018 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || || || || || || ||||| || ||||| |||| || ||| || || Sbjct 20019 AGAGGCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCGGACCCTGTCCGTCTACAATA 20078 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||| || || |||| || || Sbjct 20079 TCCAAAAAGAGTCCACTTTGCACCTGGT 20106 >seq17328 Length=23406 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/196 (72%), Gaps = 7/196 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAA---AACGATCACCCTCGAGGTGGAAAGCTCA 177980 || || || ||||||||||| ||||| || | ||||| || ||||| ||| || Sbjct 1607 CAGATCTTTGTGAAAACTCTGACAGGCAACATCATCATCACTCTTGAGGT--CCAGCCCA 1550 Query 177981 --GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACC 178038 |||||||| |||||| |||| ||||| || ||||| |||| |||| || ||| Sbjct 1549 GTGACACCATTGAGAACATCAAGGCCAAGATCCAAGACAAGGAAGCCATCCTACCTCACC 1490 Query 178039 AGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATA 178098 |||| |||| || || || || || ||||| || ||||| ||||||| || | || | Sbjct 1489 AGCAGAGACTGATATTTGCTGGCAAGCAGCTAGAGGATGGCCGGACTCTGTCCTACTACA 1430 Query 178099 ACGTCCAAAAAGAATC 178114 || |||| ||||| || Sbjct 1429 ACATCCAGAAAGAGTC 1414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202830153405062