Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20lutescens_20[genbank_20GCA_5F001685075.1_202016-07-14] 58,423 sequences; 2,353,188,398 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3025 125 7e-24 seq22505 120 3e-22 seq5999 120 3e-22 seq2959 114 1e-20 seq5338 113 4e-20 seq248 111 1e-19 seq1738 102 8e-17 seq8984 89.7 5e-13 >seq3025 Length=599017 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| | || || Sbjct 117927 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCC 117986 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||| | || ||||||||| | Sbjct 117987 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 118046 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | |||||||| | ||| ||||||| || || || ||| Sbjct 118047 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTA 118106 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || ||||| |||||||| Sbjct 118107 CCAGTTAAGGTTTTCACGAAGATCTGCAT 118135 Score = 102 bits (112), Expect = 8e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| |||||||| |||||||| | || || Sbjct 115669 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCC 115728 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| ||||| | ||| | || ||||||||| | Sbjct 115729 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 115788 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 || || ||| | | | |||||||| | ||| ||||||| || || || || Sbjct 115789 ATCTTGGCCTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTT 115847 >seq22505 Length=6242 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| |||| ||| ||| ||||| ||||| || ||||| Sbjct 3180 GCCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGA 3239 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || || |||||||||||||| |||||||| | ||| ||||| | || Sbjct 3240 CAGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGG 3299 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| || | | || || || | || || Sbjct 3300 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGAC 3359 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||| |||| ||||| || || ||||||||||| Sbjct 3360 CTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCATGTT 3410 >seq5999 Length=119422 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||||| |||| ||| ||| ||||| ||||| || ||||| Sbjct 3063 GCCTCCACGCAGACGAAGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAATCGGA 3004 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || | || || |||||||||||||| |||||||| | ||| ||||| | || Sbjct 3003 CAGGGTCCGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGG 2944 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| || | | || || || | || || Sbjct 2943 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGAAATTCTTGATGGTATCACTGGGCTAGAC 2884 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || || || ||| |||| ||||| || || ||||||||||| Sbjct 2883 CTCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAATATCTGCATGTT 2833 >seq2959 Length=310600 Score = 114 bits (126), Expect = 1e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||| ||||| ||||| || || || || ||||| Sbjct 279626 AGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGG 279685 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || ||||| ||||| | ||| | || ||| Sbjct 279686 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCT 279745 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | ||||| || | ||| ||||||| || Sbjct 279746 TTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTG 279805 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || ||||||| ||||| ||||| || ||||| || Sbjct 279806 ATGGTCTTGCCCGTCAAGGTCTTCACGAAGATTTGCATTTT 279846 >seq5338 Length=92157 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||| ||||| ||||| || || || || ||||| | || || Sbjct 52161 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 52220 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || ||||| ||||| | ||| | || ||| || ||| | Sbjct 52221 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCTTTATCCTGG 52280 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | ||||| |||| | ||||||||| || || ||||| Sbjct 52281 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTCGGCGCCACCTCCAGGGTGATGGTTTTG 52340 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTTATC 41868 | ||||| ||||| | ||| || ||||| || || Sbjct 52341 CTGGTCAGGGTCTTCATGAAGATTTGCATTTTGTC 52375 >seq248 Length=567972 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| ||| ||| |||| || || || |||||||| |||| Sbjct 1465 AGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTAGATATTGTAATCGGAGAGAGTGCAA 1524 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 || || || ||||||||||| || || || || |||| ||| | |||| || ||| Sbjct 1525 TCATCTTCCAGCTGCTTGCCAGCAAAGATGAGTTGCTGATGGGGGGGTGGAATGCCCTCT 1584 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||||| ||| || ||||| | | ||||| || | ||||||||||| || Sbjct 1585 TTGTCCAGGATCTTCACCTTCACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTG 1644 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || ||||| ||||| || ||||| || Sbjct 1645 ATGGTCTTGCCGGTTAGGGTCTTCACGAAGATTTGCATTTT 1685 >seq1738 Length=291085 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| |||| ||| ||| || || || || ||| |||| ||||| || Sbjct 20115 AGGCGAAGCACCAGGTGCAAAGTGGACTCTTTTTGGATATTGTAGACGGACAGGGTCCGG 20056 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || |||||||| | ||| ||||| | || | || ||| Sbjct 20055 CCATCCTCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCC 19996 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||| ||||| | || Sbjct 19995 TTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTG 19936 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || ||| |||| ||||| || || ||||||||||| Sbjct 19935 ATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 19895 >seq8984 Length=72256 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41656 CAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAG 41715 ||| |||| ||| ||| ||||| ||||| |||||||| ||||| || | || || || Sbjct 54603 CAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTCCGGCCATCCTCCAG 54544 Query 41716 CTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 |||||||||||| |||||||| | ||| ||||| | || | || |||||||| Sbjct 54543 CTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCAGGTGGGATGCCTTCCTTGTC 54490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461966385167600