Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq125977 98.7 1e-15 seq172906 84.2 2e-11 >seq125977 Length=8618 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/260 (69%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 16288 CCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGAT 16347 ||||||||| | ||||| || || || ||||| || || || |||| ||| | || | Sbjct 4824 CCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCCAC 4765 Query 16348 TAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTT 16407 | |||||| | || ||||| ||||| | | |||||| | | |||| |||| || Sbjct 4764 AACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCCTT 4705 Query 16408 TTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACA-AT-TTCTCTTTTTCCTGAATA 16465 | ||| | | || ||| || || || || || || | || ||| || | | |||| Sbjct 4704 CTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATC 4645 Query 16466 TCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCT 16525 | | || || || ||||| || | ||||||||||| || |||||||| || ||||| Sbjct 4644 TTTA--ATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCA 4587 Query 16526 ATCTGAAATCCATAGAAGCA 16545 || || || |||||||| || Sbjct 4586 ATTTGGAAGCCATAGAAACA 4567 Score = 82.4 bits (90), Expect = 8e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 16194 ACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || || ||||| || |||| || || |||||||| ||||| |||||||||| Sbjct 5044 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 4985 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT 16296 | || | || ||||| ||| |||||||| | ||||||||| Sbjct 4984 ATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATAT 4942 >seq172906 Length=2851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| || |||||||| |||||||| || ||||| | || ||||| |||| |||| Sbjct 1441 CTTCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1382 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 | | |||||| || |||||||||||||| || ||||| | || || || | ||||| | Sbjct 1381 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 1322 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 1321 CCACCACTCTTTCC 1308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509174021367200