Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq89429 100 2e-16 seq11430 96.9 3e-15 >seq89429 Length=9158 Score = 100 bits (110), Expect = 2e-16 Identities = 269/408 (66%), Gaps = 4/408 (1%) Strand=Plus/Plus Query 18579 TTTGGAATGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGT 18638 || || ||||| || | ||| || || || ||||||||||||| | || || || || Sbjct 4054 TTAGGCATGCAGGCGCCATAGAACCTGAGAGATGAATTTCCTCTGCTCACAACCAAACGA 4113 Query 18639 GTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCC 18698 || || |||| || || | | |||||| | ||||||||| || || || | | Sbjct 4114 GTGTTCTGGAAGGATGTTTTAAAGGAGTTGCTGTGGTTTATCAAGGGATCCACAATTGCT 4173 Query 18699 AAAGAACTCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTA 18758 |||||||| ||| | |||| | || |||||| | || || | | ||||| Sbjct 4174 AAAGAACTGGCCTCCAAAGGAGTGAGAATCTGGGATGCCAATGGGTCCCGAGATTTTCTG 4233 Query 18759 AATAGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAG 18818 | || | || ||| | |||||| ||| | || ||||| |||| || |||||| Sbjct 4234 GACAGCATGGGATTCTCTGCAAGACAGGAAGGGAAGCTGGGCCCAGTTTATGGTTTCCAG 4293 Query 18819 TGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATC 18878 | ||||||||||||| | || || ||||| | ||| | || | |||||| | Sbjct 4294 TAGAGACATTTTGGATCAGACTACAAAGATATGGATTCAGATTACTCGAGTCAAGGAGTA 4353 Query 18879 GATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATT 18938 || ||||||||| || || | ||| | ||||| | || || || |||| | Sbjct 4354 GACGAGCTGCAAAAAGTGATTG--ACACTCAAAACCAGTCCTGACGAGAGAAGAATCTTG 4411 Query 18939 ATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCA 18986 || | ||| |||| ||||| ||| | ||| | |||| ||| |||||| Sbjct 4412 ATGT-GTC-CGGAACCCAAAAGATCTTCCCCTGATGGCACTTCCTCCA 4457 >seq11430 Length=26483 Score = 96.9 bits (106), Expect = 3e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| | |||| ||| ||||| || ||| | | ||||| || || || || || Sbjct 7708 GATCTTCCCCTGATGGCACTGCCTCCTTGCCACGCCCTCTGTCAATTCTATGTAGCGAAT 7649 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | || ||||| | |||||||| || || ||||||||||| || || || ||| Sbjct 7648 GGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTC 7589 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 |||||||| | ||||| || || |||||| | | || || | ||||| || || Sbjct 7588 AACATTGCCAGCTATGCCCTGCTCACCTACGTGATTGCACACATCACAGGCCTAAA 7533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397797626030700