Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1257 132 3e-26 seq68442 122 6e-23 seq33755 113 3e-20 >seq1257 Length=62205 Score = 132 bits (146), Expect = 3e-26 Identities = 111/135 (82%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 4149 ATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTT 4208 ||||||| || | | || || |||||||| ||||||| |||||| |||||||||||||| Sbjct 24606 ATAACTC-TACTTACCTTGTAAACAGAACTGCCTCCAACTATCCAAACCATGTCTACTTT 24664 Query 4209 ATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAA 4268 ||||||||| ||||| ||||| ||||||||| |||||||| | ||| || || | ||| Sbjct 24665 ATTTGCTAACTCTGGTTGTTCAATAAGTTTTAGGGCATCATCCAGACTTTTGGCAAGAAA 24724 Query 4269 ATGAGCTCTATGTGG 4283 |||||||| ||||| Sbjct 24725 ATGAGCTCCTTGTGG 24739 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | ||| |||||| |||||||||| || ||||||||||| Sbjct 31891 CTTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGG 31950 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||| | ||||||||| || Sbjct 31951 AATGGAGAACCAGGTTTTCCGGCCCATAATCACAAGGTTCTGTTTACCT 31999 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 ||||||||||||| | | ||||| |||||| || || ||||||| |||||| || ||||| Sbjct 21778 AAGTTTGTATTTCCCCAAATCAATTTCTGGGAAGAATGTGTCACTTTCAAATTCCTGCAT 21837 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| || | || ||| | |||| || || | | ||| ||||| || | ||| | Sbjct 21838 GATCCTTGTTATGAAGAGTCTGAGATGGCCTGACTGATCCATGGCTTCCTTTAAAACAAA 21897 Query 4176 AC 4177 || Sbjct 21898 AC 21899 >seq68442 Length=11728 Score = 122 bits (134), Expect = 6e-23 Identities = 244/368 (66%), Gaps = 29/368 (8%) Strand=Plus/Plus Query 4000 TACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGT 4059 |||||||| | || || || || || | |||||| |||| || |||||| | | || Sbjct 5107 TACTTAATGCCGTTTTCCTCCTGGACTTCAGAAAGGACACCTGTGTATTCTGGGAGATGT 5166 Query 4060 TTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATC 4119 || ||| | | | ||||| |||||| |||| |||||| |||| | || ||||||||| Sbjct 5167 TTATATCTTCCCAAATCAATTTCTGGGAAAACCATGTCACTTTCAGATTCCTGCATGATC 5226 Query 4120 CTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTA 4179 | ||| |||| ||| | | | || ||||| Sbjct 5227 TT--------------------------GAT---TCATGGCTCCCTCGTGAACGGAACTG 5257 Query 4180 CCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTT 4239 |||| | |||| ||| ||||||||||||||| |||||| || ||||| ||||||||| Sbjct 5258 CCTCTGGCTGTCCAAACCTTGTCTACTTTATTTGGTAATTCCGGTTGTTCAGTAAGTTTT 5317 Query 4240 AAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCC 4299 || |||| |||| | | || | | |||||||| || ||||| | ||||| || || Sbjct 5318 AAGGCATTGTCTAGATTTTTGACAAGAAAATGAGTTCCTTGTGGTGGTTCCTTGAGGTCT 5377 Query 4300 TTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATTGAGAAC 4359 |||||||| | | ||||||| |||| ||| || | |||||||| |||| | Sbjct 5378 CCACTGAGAACTATGTGAATTCTGTTCTTTACTAGCCCATTTTCCTCAGGAACGGAGATC 5437 Query 4360 CAAGTCTT 4367 || || || Sbjct 5438 CAGGTTTT 5445 >seq33755 Length=16203 Score = 113 bits (124), Expect = 3e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 26936 TTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTT 26995 |||| | |||| | | || |||| | ||||| |||||||| ||| ||| |||||||| Sbjct 8337 TTAGGCAACATGGCGGACGATGGAGGACACGCAGGTGCAGCCCACACCCACAAGCATCTT 8396 Query 26996 CTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTG 27055 ||| | | || || |||||| | | || | | | || || || |||||||| Sbjct 8397 CTCCACTCGGAAGGAGAGGGGGCAGTTCTCAGGCTCCCTCCTCAGGACCAGGATCTCTTG 8456 Query 27056 TTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAA 27115 |||| | || ||||||||||||| || | ||||| | |||||||||||| | Sbjct 8457 CTGGAGGAGAACAGAGTTCATGTGGTGCTCCAACTTCCCCTGAGCATTAACACAGCGCTG 8516 Query 27116 GTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| ||| ||||| |||||||| |||||||| | | || || ||||| Sbjct 8517 GTGGCGGCACTGTGCCTCCCAGATCACAGAAGGATATCTGTTAGGGTCCTCGTTGCG 8573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359708212585460