Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq125977 179 4e-40 seq18550 113 5e-20 seq36452 111 2e-19 seq172906 102 1e-16 seq42668 102 1e-16 seq59957 86.0 7e-12 >seq125977 Length=8618 Score = 179 bits (198), Expect = 4e-40 Identities = 196/260 (75%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||| |||| Sbjct 4826 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCC 4767 Query 24279 ATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 24335 | || || ||||||||| | | | |||| ||||| | ||||| ||||| Sbjct 4766 ACAACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCC 4707 Query 24336 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTA 24395 |||||||| ||| ||||||||||||| |||||||| |||||||| | | || || | Sbjct 4706 TTCTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAA 4647 Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||||| || || ||||| | || || |||||||| ||||| |||||||| ||||| Sbjct 4646 TCTTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCA 4587 Query 24456 ATTTGAAATCCGTAGAAACA 24475 ||||| || || |||||||| Sbjct 4586 ATTTGGAAGCCATAGAAACA 4567 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||||| || || || || ||||||| |||||| ||||| ||||| | |||||||||| Sbjct 5044 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 4985 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 24232 | || || || ||||| || || || || || ||||| ||||| || Sbjct 4984 ATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGA 4939 >seq18550 Length=27441 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2463 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2522 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| ||| ||||| ||||| ||||| ||||| || || | | |||| Sbjct 2523 GACTCATTATTCCCCAGAATCTGAGCGGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2582 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 2583 CTGTTTCTTATACCATA 2599 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 19225 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 19284 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | |||||| | || || ||| | || || | |||||| |||| Sbjct 19285 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 19344 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || |||||| | || | |||||||| || ||||| Sbjct 19345 GTTCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCAT 19390 Score = 82.4 bits (90), Expect = 9e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 8745 CTCCACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCG 8804 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 8805 TTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 8864 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 8865 AGGCTCCAGGTAAAT 8879 >seq36452 Length=40126 Score = 111 bits (122), Expect = 2e-19 Identities = 174/244 (71%), Gaps = 9/244 (4%) Strand=Plus/Minus Query 21895 AAACC-CTTGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTTCAGTTCTGGAT 21953 ||||| | ||| ||||| | ||| |||| || | || |||||| ||| |||||| Sbjct 26947 AAACCTCCTGAGCTCCTTTCAGTGT--TATCCAGTGTTTCAACTTCTA--AGT-CTGGAT 26893 Query 21954 AATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTTACATTAAATGTAT 22013 || | || |||| | | || ||||| || || | ||| || | ||||| | ||| | | Sbjct 26892 AAAAAATTCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTTACTTCAAACTTCT 26833 Query 22014 ATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCTTCGTCTATTACAC 22073 ||||||| |||| || | || || |||||||| ||||||||||||||||| |||| Sbjct 26832 CTTTTCCAAAGTTAAACAGCACAACACCAATATTTCCTCTATAATCTTCGTCTATGACAC 26773 Query 22074 CGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGAGCTATTCTACCAT 22130 || |||||| ||| || | |||| | || ||||||| | ||||| ||| |||| Sbjct 26772 CGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGAAGCTACTCTTCCAT 26713 Query 22131 AGCA 22134 |||| Sbjct 26712 AGCA 26709 >seq172906 Length=2851 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | |||||| || || |||||||||||||| ||||| | ||| || Sbjct 1439 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1380 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| || || | |||||||| ||||| ||||||| ||||| || || |||||||| Sbjct 1379 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 1320 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 1319 ACCACTCTTTCCCC 1306 >seq42668 Length=14146 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||||||||| |||||| ||| | || || || || ||||| | Sbjct 540 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 481 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || |||||||||||||| || || || || |||||||| || | | |||| Sbjct 480 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTCT 421 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 420 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 370 >seq59957 Length=11192 Score = 86.0 bits (94), Expect = 7e-12 Identities = 168/242 (69%), Gaps = 11/242 (5%) Strand=Plus/Minus Query 154938 TAGAGAATGAGATAGAAAAGTGTATTAGACGACT-CATGTTGTACATTTCTGTGAGAAA- 154995 |||||| ||| ||||| ||||| || |||| || | ||| | || |||||||||||| Sbjct 2977 TAGAGAGTGAAATAGAGAAGTGCATCAGACAGCTGCTTGTCGGTCACTTCTGTGAGAAAC 2918 Query 154996 AAGAGGATATCAAATACGCATATAGATTCATCAAGGTATATAAACCTGGGGAGGAGACTA 155055 ||||| | || | ||| ||| | ||||||| || ||| ||| |||| | | Sbjct 2917 AAGAGAAGATGAGGTACACATGCAAATTCATCCCAGTCCATAGACC---GGAGCCGTGTG 2861 Query 155056 CCTCGACATACGTGTGCGCTATCAAAGTGGAAAGATGTTGCTGTGCTGTGTTTACAGATT 155115 | |||| || || || ||| |||||| |||| ||||||||||||||| | | Sbjct 2860 CT----CATATGTCTGTGCACTCAGAGTGGAGAGATTCTGCTGTGCTGTGTTTGCTGCAG 2805 Query 155116 GGCCAGAATCATGGTATATGG-ATACTAGTGGTATCAAGAAGTATTCTCCAGATGAATGG 155174 ||| || || ||| | ||| | || || ||| | ||||||| | | |||| |||||| Sbjct 2804 TGCCTGAGTCCTGGCACGTGGAAGACAAG-GGTGTGAAGAAGTTTACCTCAGAGGAATGG 2746 Query 155175 GT 155176 || Sbjct 2745 GT 2744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591120654100800