Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq32391 260 2e-64 seq11430 141 1e-28 seq41226 131 2e-25 seq107316 93.3 5e-14 seq42013 82.4 9e-11 >seq32391 Length=22748 Score = 260 bits (288), Expect = 2e-64 Identities = 581/862 (67%), Gaps = 15/862 (2%) Strand=Plus/Plus Query 9509 TGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTA 9568 ||||||| || | || ||| | || |||||| |||| |||| || ||| | |||| Sbjct 17365 TGGGCAACATGGTGGTTGTGCTGATCCTCATAAAGTACAGGAAGCTCCAAATTATGACTA 17424 Query 9569 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 9628 | || | ||| | |||||||| || || ||| |||| ||||| || ||| | ||||| | Sbjct 17425 ATATCTACCTGCTCAACTTGGCTATTTCGGACCTGCTTTTTCTCTTCACTGTTCCATTCT 17484 Query 9629 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 9688 |||| |||||| || |||| |||| ||| |||||| | | |||||||| || Sbjct 17485 GGATTCACTATGTT---ATGTGGAATGAATGGGGTTTTGGCTATCACATGTGTAAAGTGA 17541 Query 9689 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 9748 || || | | |||| | | ||||||| || |||||| |||||||||||| ||| Sbjct 17542 TCTCTGGGTTTTATTACCTTGCCTTGTACAGTGAGATCTTTTTCATCATCCTGCTGACAA 17601 Query 9749 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCT 9808 | || ||||| || || |||| ||||||| ||| |||| | || || || | Sbjct 17602 TTGATAGGTACCTGGCCATTGTTCATGCTGTGTTTGCCCTGAGAACCCGGACTGTGACTT 17661 Query 9809 GTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAAT 9868 || | | ||| | | |||||| ||||||||| || | ||||||| | Sbjct 17662 TTGCTACCATCACCAGCATCATCACCTGGGGACTGGCAGGGCTGGCCGCATTCCCTGAGT 17721 Query 9869 TTTTCTTTCATGGACACCAAGATGACAATGGTAGGG---TTCAGTGTGATCCTTACTACC 9925 || |||| ||| |||||| || || || | ||| |||| |||| | |||| Sbjct 17722 TTATCTTCTATGAGTCCCAAGACAACTTTGA-AGAGCATTTC--TGTGGTCCTCATTACC 17778 Query 9926 CAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 9984 ||||| || | || | |||| ||| ||| | | | ||| ||| || | Sbjct 17779 CAGAGG-GTGAAGAAGACAGCTGGAAGCGTTTCCATGCTCTGAGAATGAATATCTTTGGC 17837 Query 9985 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 10044 || | | ||||| |||||||||| | ||||||||| | ||| || | || ||| || Sbjct 17838 CTAGCTCTCCCTCTCCTCATTATGGTTATCTGCTACTCAGGAATCATTAAAACTCTGCTG 17897 Query 10045 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 10104 || |||||| || || ||| ||||||||||| |||| || ||||| ||||| | | Sbjct 17898 AGATGCCCCAATAAAAAAAAGCACAAGGCCATCCGGCTTATTTTTGTTGTCATGATAGTG 17957 Query 10105 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCAC-GCAAC 10163 | |||| |||||||||| || |||||| | ||||| || || ||| | |||||| ||| Sbjct 17958 TTTTTTATTTTTTGGACCCCGTACAACCTGGTTCTTCTTCTCTCTGCTTTTCACAGCA-- 18015 Query 10164 CCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 10222 | || || ||| ||| | ||||| || ||||| |||| ||| | | || Sbjct 18016 CATTTTTGGAGGACAGCTGTCAACAGAGCAAACACCTGGACCTGGCCATGCAGGTGACTG 18075 Query 10223 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 10282 | | |||||||| ||||| || ||||||||| | ||||| || || || || |||| Sbjct 18076 AGGTGATTGCCTACACCCACTGCTGTATCAACCCAATCATCTATGCCTTTGTTGGCGAGA 18135 Query 10283 AGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGT 10342 ||| | | |||||| | || |||||| ||||||| |||||||| | || | Sbjct 18136 GGTTCCGGAAACACCTTCGGCTTTTTTTCCACCGACACGTGGCAATCTACCTGGGGAAAT 18195 Query 10343 ACATCCCCTTCCTGTCTGGTGA 10364 | || || ||||| ||||||| Sbjct 18196 ATATTCCATTCCTTCCTGGTGA 18217 Score = 260 bits (288), Expect = 2e-64 Identities = 581/862 (67%), Gaps = 15/862 (2%) Strand=Plus/Plus Query 176395 TGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTA 176454 ||||||| || | || ||| | || |||||| |||| |||| || ||| | |||| Sbjct 17365 TGGGCAACATGGTGGTTGTGCTGATCCTCATAAAGTACAGGAAGCTCCAAATTATGACTA 17424 Query 176455 ACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTT 176514 | || | ||| | |||||||| || || ||| |||| ||||| || ||| | ||||| | Sbjct 17425 ATATCTACCTGCTCAACTTGGCTATTTCGGACCTGCTTTTTCTCTTCACTGTTCCATTCT 17484 Query 176515 GGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGC 176574 |||| |||||| || |||| |||| ||| |||||| | | |||||||| || Sbjct 17485 GGATTCACTATGTT---ATGTGGAATGAATGGGGTTTTGGCTATCACATGTGTAAAGTGA 17541 Query 176575 TCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAG 176634 || || | | |||| | | ||||||| || |||||| |||||||||||| ||| Sbjct 17542 TCTCTGGGTTTTATTACCTTGCCTTGTACAGTGAGATCTTTTTCATCATCCTGCTGACAA 17601 Query 176635 TAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCT 176694 | || ||||| || || |||| ||||||| ||| |||| | || || || | Sbjct 17602 TTGATAGGTACCTGGCCATTGTTCATGCTGTGTTTGCCCTGAGAACCCGGACTGTGACTT 17661 Query 176695 GTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAAT 176754 || | | ||| | | |||||| ||||||||| || | ||||||| | Sbjct 17662 TTGCTACCATCACCAGCATCATCACCTGGGGACTGGCAGGGCTGGCCGCATTCCCTGAGT 17721 Query 176755 TTTTCTTTCATGGACACCAAGATGACAATGGTAGGG---TTCAGTGTGATCCTTACTACC 176811 || |||| ||| |||||| || || || | ||| |||| |||| | |||| Sbjct 17722 TTATCTTCTATGAGTCCCAAGACAACTTTGA-AGAGCATTTC--TGTGGTCCTCATTACC 17778 Query 176812 CAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGT 176870 ||||| || | || | |||| ||| ||| | | | ||| ||| || | Sbjct 17779 CAGAGG-GTGAAGAAGACAGCTGGAAGCGTTTCCATGCTCTGAGAATGAATATCTTTGGC 17837 Query 176871 CTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTG 176930 || | | ||||| |||||||||| | ||||||||| | ||| || | || ||| || Sbjct 17838 CTAGCTCTCCCTCTCCTCATTATGGTTATCTGCTACTCAGGAATCATTAAAACTCTGCTG 17897 Query 176931 AGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCC 176990 || |||||| || || ||| ||||||||||| |||| || ||||| ||||| | | Sbjct 17898 AGATGCCCCAATAAAAAAAAGCACAAGGCCATCCGGCTTATTTTTGTTGTCATGATAGTG 17957 Query 176991 TATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCAC-GCAAC 177049 | |||| |||||||||| || |||||| | ||||| || || ||| | |||||| ||| Sbjct 17958 TTTTTTATTTTTTGGACCCCGTACAACCTGGTTCTTCTTCTCTCTGCTTTTCACAGCA-- 18015 Query 177050 CCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 177108 | || || ||| ||| | ||||| || ||||| |||| ||| | | || Sbjct 18016 CATTTTTGGAGGACAGCTGTCAACAGAGCAAACACCTGGACCTGGCCATGCAGGTGACTG 18075 Query 177109 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 177168 | | |||||||| ||||| || ||||||||| | ||||| || || || || |||| Sbjct 18076 AGGTGATTGCCTACACCCACTGCTGTATCAACCCAATCATCTATGCCTTTGTTGGCGAGA 18135 Query 177169 AGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGT 177228 ||| | | |||||| | || |||||| ||||||| |||||||| | || | Sbjct 18136 GGTTCCGGAAACACCTTCGGCTTTTTTTCCACCGACACGTGGCAATCTACCTGGGGAAAT 18195 Query 177229 ACATCCCCTTCCTGTCTGGTGA 177250 | || || ||||| ||||||| Sbjct 18196 ATATTCCATTCCTTCCTGGTGA 18217 >seq11430 Length=26483 Score = 141 bits (156), Expect = 1e-28 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| ||| || | || |||||| ||||||| |||||||| |||||||||||| Sbjct 7536 AGGCCTGTGATGTGTGCAATCACGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 7595 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| ||||| || || || | |||||| |||||||| || |||||||| ||| Sbjct 7596 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGCT 7655 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||| || || ||| |||||| || ||||| ||||| Sbjct 7656 ACATAGAATTGACAGAGGGCGTGGCAAGGAGGCAGTGCCAT 7696 >seq41226 Length=14440 Score = 131 bits (144), Expect = 2e-25 Identities = 125/159 (79%), Gaps = 7/159 (4%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 |||||| |||| | ||||||||| || ||||| || ||||||||||||| | ||| Sbjct 3889 CAGCGCTGCAGCTGCCTCCTGAGGGTCTTCAGCTTCTCTCCCAGGGAGTTCAAATGCTCC 3948 Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199 || || |||| || |||||||| ||||||||||||||||| |||||||||||| Sbjct 3949 TTGATTTCTGG-----GCCATGGTTCTCTGCCTGGGGCATCACCTCTACCAGGTAAAACT 4003 Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||| || |||| || ||||| |||| |||||||| Sbjct 4004 GGATCATTTCTGACAAGGTTTGGCAACCCAAGTAACCCT 4042 Score = 105 bits (116), Expect = 8e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 137924 AGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGC 137983 || |||||||||| |||||||||| || |||||| |||| |||||||||||||| || Sbjct 1848 AGCTTTTCATCTTGATGGTCATGTATGCTTCTATGCAGTTGATGAAGATGTCAAATTCAT 1907 Query 137984 TCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 ||||||||||||| || ||||| || ||||||| Sbjct 1908 TCATGGCCTTGTAAACACCTTTCTCTTGGAGCT 1940 >seq107316 Length=6452 Score = 93.3 bits (102), Expect = 5e-14 Identities = 207/310 (67%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 176356 TACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGA 176415 ||||| | |||||| || ||||| || |||| || | ||||||||||| ||| | Sbjct 3113 TACCCCCTCTGTATTCCCTGGTGTTCATCATTGGCGTGATAGGCAATATCTTGGTGATTC 3054 Query 176416 TTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGG 176475 | || |||| ||||| || | || | | || | ||| | || || ||| ||| Sbjct 3053 TGGTTCTCATGCAATACAGGAGACTTCGAAGCATGACCAGCATCTACCTATTCAACCTGG 2994 Query 176476 CAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGT 176535 | || ||||| || | || |||| |||||||| || ||||| |||| | || Sbjct 2993 CCATCTCTGATCTGGTCTTCCTTTCCACTTTGCCTTTCTGGATTGACTACA---AGCTGA 2937 Query 176536 ATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGT 176595 | | | ||| |||||| | || |||||||||| ||| || | | |||| || Sbjct 2936 AAGACAACTGGGTATTTGGTGATGCCATGTGTAAACTCCTCTCTGGGTTTTATTACCTGG 2877 Query 176596 CACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTG 176655 || ||||| || |||| | ||||||||||| || | |||||||| || || ||| Sbjct 2876 GCCTATACAGTGAGATCTTCTTTATCATCCTGCTGACGATTGACAGGTACCTGGCCATTG 2817 Query 176656 TCTATGCTGT 176665 || |||| || Sbjct 2816 TCCATGCAGT 2807 Score = 93.3 bits (102), Expect = 5e-14 Identities = 207/310 (67%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 9470 TACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGA 9529 ||||| | |||||| || ||||| || |||| || | ||||||||||| ||| | Sbjct 3113 TACCCCCTCTGTATTCCCTGGTGTTCATCATTGGCGTGATAGGCAATATCTTGGTGATTC 3054 Query 9530 TTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGG 9589 | || |||| ||||| || | || | | || | ||| | || || ||| ||| Sbjct 3053 TGGTTCTCATGCAATACAGGAGACTTCGAAGCATGACCAGCATCTACCTATTCAACCTGG 2994 Query 9590 CAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGT 9649 | || ||||| || | || |||| |||||||| || ||||| |||| | || Sbjct 2993 CCATCTCTGATCTGGTCTTCCTTTCCACTTTGCCTTTCTGGATTGACTACA---AGCTGA 2937 Query 9650 ATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGT 9709 | | | ||| |||||| | || |||||||||| ||| || | | |||| || Sbjct 2936 AAGACAACTGGGTATTTGGTGATGCCATGTGTAAACTCCTCTCTGGGTTTTATTACCTGG 2877 Query 9710 CACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTG 9769 || ||||| || |||| | ||||||||||| || | |||||||| || || ||| Sbjct 2876 GCCTATACAGTGAGATCTTCTTTATCATCCTGCTGACGATTGACAGGTACCTGGCCATTG 2817 Query 9770 TCTATGCTGT 9779 || |||| || Sbjct 2816 TCCATGCAGT 2807 >seq42013 Length=14282 Score = 82.4 bits (90), Expect = 9e-11 Identities = 180/269 (67%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 9577 CTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCAC 9636 || || ||| |||| || ||||| | | || || || | || || || ||||| || Sbjct 10067 CTATTCAACCTGGCTATCTCTGATCTAGTCTTCCTCTTTGCATTACCTTTCTGGATTGAC 10126 Query 9637 TATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGT 9696 ||||| ||| | || |||| ||||||| | || ||||||| | ||| | Sbjct 10127 TATAT---AATAAAAGGAGACTGGATTTTTGGTGATGCCATGTGTAAGTTCCTCTCTGCA 10183 Query 9697 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 9756 | | |||| || ||||||| | | |||| ||||| |||||| ||| | || ||| Sbjct 10184 TTTTATTACCTGGGCTTGTACAGTGACATGTTTTTCATCACCCTGCTTACAATTGATAGG 10243 Query 9757 TATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATA 9816 |||||||| || ||| ||||||| ||| || || |||| || || | |||||| Sbjct 10244 TATCTAGCCGTCGTCCATGCTGTGTTTGCCCTGCGGGCCCGAACTGTCACTTTTGGCATC 10303 Query 9817 GTTACCTGTGTATGTACCTGGTTTCTGGC 9845 ||||| | || |||||| | ||||| Sbjct 10304 ATTACCAGCGTCATCACCTGGGTCCTGGC 10332 Score = 82.4 bits (90), Expect = 9e-11 Identities = 180/269 (67%), Gaps = 3/269 (1%) Strand=Plus/Plus Query 176463 CTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCAC 176522 || || ||| |||| || ||||| | | || || || | || || || ||||| || Sbjct 10067 CTATTCAACCTGGCTATCTCTGATCTAGTCTTCCTCTTTGCATTACCTTTCTGGATTGAC 10126 Query 176523 TATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGT 176582 ||||| ||| | || |||| ||||||| | || ||||||| | ||| | Sbjct 10127 TATAT---AATAAAAGGAGACTGGATTTTTGGTGATGCCATGTGTAAGTTCCTCTCTGCA 10183 Query 176583 GTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGG 176642 | | |||| || ||||||| | | |||| ||||| |||||| ||| | || ||| Sbjct 10184 TTTTATTACCTGGGCTTGTACAGTGACATGTTTTTCATCACCCTGCTTACAATTGATAGG 10243 Query 176643 TATCTAGCTGTTGTCTATGCTGTAACTGCTTTGAGGTTTAGAACAGTAACCTGTGGCATA 176702 |||||||| || ||| ||||||| ||| || || |||| || || | |||||| Sbjct 10244 TATCTAGCCGTCGTCCATGCTGTGTTTGCCCTGCGGGCCCGAACTGTCACTTTTGGCATC 10303 Query 176703 GTTACCTGTGTATGTACCTGGTTTCTGGC 176731 ||||| | || |||||| | ||||| Sbjct 10304 ATTACCAGCGTCATCACCTGGGTCCTGGC 10332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587491821058400