Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq6119 232 8e-56 seq95106 224 1e-53 seq11821 104 3e-17 seq126696 95.1 1e-14 >seq6119 Length=33020 Score = 232 bits (256), Expect = 8e-56 Identities = 268/361 (74%), Gaps = 0/361 (0%) Strand=Plus/Plus Query 83033 TAGTAGCCGCGCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTC 83092 ||| |||||| | || ||| ||||||||| || ||||| || || | | | | ||| Sbjct 24624 TAGGAGCCGCTAGGGTGCTGGGAGAGCAGGGCTTCTATGTCAGGTTCAATGTCGATGGTG 24683 Query 83093 TGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCG 83152 | ||||| |||||||||||||||| || |||||| | ||||||| |||||||||| Sbjct 24684 CGAAAGCGGCGGCTGTACCTGCGCACTGGAACGCCGTCCGGGCCCACCAGGAACTTCTCG 24743 Query 83153 AAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTC 83212 ||||||||||| | |||||||||||| || |||||||| ||| || ||||||| || Sbjct 24744 AAGTTCCAGGCAATGTCGTTGCGGCATACCGGAGACCAAATGATGTACTTGGGGTCGGTC 24803 Query 83213 ACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGC 83272 | ||||| | ||||| || ||||| |||| | ||| || ||||||| |||||| Sbjct 24804 ATGAGCGCAGTGGGCTCGTCACTGGGCGCTGGCAAAGACTCCCGCAGGAAGGTAAAGAGC 24863 Query 83273 GGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAG 83332 || || ||| | |||| || ||||||||||||||||| | ||||||| || ||||| Sbjct 24864 GGGTGAGCCTTCTCACCATTCACCTCGCACTTCTCGAACAATGTAAAGTTGGGTTCGAAC 24923 Query 83333 CCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCC 83392 || ||||| |||| | ||| |||||| || ||||| | |||| ||| || ||| Sbjct 24924 CCCCCACCAGGTCGGATATACTTGAGGGAATTCAGAATCTCTTCGTTCTTGGCATTCTCC 24983 Query 83393 T 83393 | Sbjct 24984 T 24984 Score = 159 bits (176), Expect = 4e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || |||||||| || |||||||| || ||||| ||||| || || | || |||| Sbjct 25191 CCTGATGTCCGAACTGATTGCACGGGAAACCGAGCACCACCAGGCCACGGGGCCCGAGGC 25250 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||| |||||||||| ||||| |||||| ||| | ||||||||||| || | Sbjct 25251 GTCTCTGCAGATCGTTCATCTCGGTGTAGTCCCGGGTCGTTGTGCCTCAGAGGGATGCGA 25310 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| ||||||| ||| |||||| | | |||| | ||||||||| || || || | Sbjct 25311 CATTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCCG 25370 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||||| || |||||||| || || Sbjct 25371 CCAGCGGGCGCGCGGAGAAGGCATATAC 25398 >seq95106 Length=7403 Score = 224 bits (248), Expect = 1e-53 Identities = 331/465 (71%), Gaps = 23/465 (5%) Strand=Plus/Minus Query 83100 GGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCC 83159 || ||| |||||||||||| || || || ||||||| ||||||||||||||||| Sbjct 1756 GGCGGCAGTACCTGCGCACTGGAACACCATCCAGGCCCACCAGGAACTTCTCGAAGTTCC 1697 Query 83160 AGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAG---CTGGGGGTCGCTCACGA 83216 |||| | || |||||||||| |||||||| ||||| || ||||||| ||| || Sbjct 1696 AGGCAATGT---TGCGGCACACCGGAGACCA---AATGACACACTTGGGGTCGGTCATGA 1643 Query 83217 GCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGAT 83276 ||| | || || || ||||| ||| ||| || ||||||| |||||||| | Sbjct 1642 GCGCAGTGGGATCATCACTGGGCGCTGGCGAACACTCCCGCAGGAAGGTAAAGAGCGGGT 1583 Query 83277 GTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGT 83336 | ||| | |||| || |||| |||||||||||| | ||||||| || ||||| || Sbjct 1582 GAGCCTTCTCACCATTCACCTTGCACTTCTCGAACAATGTAAAGTTGGGTTCGAACCC-- 1525 Query 83337 TCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGT 83396 | || | ||| |||||| || |||| | |||| ||| || ||||| | Sbjct 1524 -------TCAGATATACTTGAGGGAATTCAGAATCTTTG--TTCTTGGCATTCTCCTGAT 1474 Query 83397 GACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCT 83456 | |||||||| || |||||||| | ||||| | ||| || || || || ||| | | || Sbjct 1473 GTCCGAACTGATTGCACGGGAAACGGAGCACCATCAGGCCACGGGC-CCGAGGTGTCTCT 1415 Query 83457 GCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCT 83516 |||| || ||||||| ||||| ||| || ||| | ||| ||||||| || || |||| Sbjct 1414 GCAGATCTTTCATCTCGGTGTAGTCCTGGGTCGTCATGCCTTAGAGGGATGCAACATTCT 1355 Query 83517 CGATGAGCAAGACCCGGCCCCGTAAGAAGCCTA--AGCTCACAGG 83559 | ||||||| ||| |||||| | | |||| | ||||||||| Sbjct 1354 CAATGAGCAGCACCTTGCCCCGCAGGGAGCCCAGGGGCTCACAGG 1310 >seq11821 Length=26122 Score = 104 bits (114), Expect = 3e-17 Identities = 164/230 (71%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 50466 TGCTCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACT 50525 |||| ||| || |||| || |||||||| ||| |||||||| | || ||| | ||||| Sbjct 19036 TGCTAGTGCACCTGTTCCCGGAGCTCTTCACTCATGAGAACCTTCGCAAGCAGTACAACT 19095 Query 50526 GCTACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCAC 50584 || ||||||| |||||||| |||| || ||||| ||| | | || |||| ||| Sbjct 19096 GCAGCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCAGCCCGCATCAGGCTGATCCGCCAC 19154 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 |||||||| |||| |||| ||| ||||| |||||||||| |||| || Sbjct 19155 TATGTGCAACTGCTCTACCCTCGGGCCAAGAACGACCGCGTGTGGACTCTGGAGTTTGTG 19214 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | ||||| |||||||| |||||| | | |||||| || |||||| Sbjct 19215 GGCAAGCTGGATGAGCGCTGTCGGCGCAG--GGACACGGAGCAGAGGCGC 19262 >seq126696 Length=5156 Score = 95.1 bits (104), Expect = 1e-14 Identities = 220/329 (67%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 |||||| ||||| | | | ||| ||| || | ||||||| | || | ||| || Sbjct 3546 GATGTCTGGCTCTATGTTGATGGTTTGGAAGGTGCGGCTGTAGCGACGGAATGGCTCCCC 3605 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187 || | ||| | | ||||||||| |||||||||||||| || ||||| ||||||| Sbjct 3606 TTCTGGACCTATGAGGAACTTCTCAAAGTTCCAGGCCACATCTGAGCGGCGCACTGGACT 3665 Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247 ||| ||||||| ||| || ||| ||| | | | ||| || ||| ||||| Sbjct 3666 CCACATGATGAGCTTGGGATCAGTCATGAGGGAGAACGGGTCATCATAAGGGTAGGGCAG 3725 Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACTTCT 83306 ||| ||| |||| |||| ||||| | | ||| ||||||||||| ||||| | Sbjct 3726 CTTGTCTTTCAGGTAGGCAAAGACTGGATGCTCGTTCTGC-CCGTTGACCTCACACTTTT 3784 Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366 | ||| | ||| | |||| | | || |||||| ||||| | ||| ||| || Sbjct 3785 GGGTAAGCCTGAAGGTGGGCTGGTACCCACCCCCAGGGCGGACATACTTGAGGCTGTTCA 3844 Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 |||||| | ||||| ||| |||||| Sbjct 3845 GGATCTCCTCGTTCTGACAGTTCTCCTGG 3873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606129813418400