Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq141308 123 2e-23 seq68848 114 1e-20 seq93163 111 1e-19 seq66926 96.9 3e-15 seq34598 96.9 3e-15 seq50167 89.7 4e-13 seq174526 87.8 2e-12 >seq141308 Length=4330 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | |||||| || | || Sbjct 4276 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 4217 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | |||||||||||| Sbjct 4216 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 4157 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| |||||| |||| ||| |||||| Sbjct 4156 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 4097 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| || | || || || || || |||||| Sbjct 4096 TTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 4064 >seq68848 Length=10048 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||||||||||||| ||||| ||||| ||||| | | Sbjct 7266 CCGCCACGCAGACGAAGCACCAAGTGCAAAGTGGACTC-TTTTGGATGTTGTAGTCGGAC 7324 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | |||| |||||| ||||| ||| | || || ||||||||||| || Sbjct 7325 AGGGTCCAGTCATCCTACAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGG 7384 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| || || | ||| || |||| ||||| Sbjct 7385 ATGCCTTCCTTGTCTTGGATCTCGGCCTTGACATTCTCGATGGTGTCACTGGGCTTGACC 7444 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || | || ||||||||||| | | || || ||||| || ||||| || Sbjct 7445 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCATGTT 7494 >seq93163 Length=7565 Score = 111 bits (122), Expect = 1e-19 Identities = 167/236 (71%), Gaps = 5/236 (2%) Strand=Plus/Plus Query 20950 CCCCTCGC--AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 |||||| | || | ||| |||| |||| |||||||| || || ||| | || || | Sbjct 7007 CCCCTCCCTGAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGA 7066 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || ||| | || |||||||| |||||| || | || ||| ||||||||| ||| Sbjct 7067 GAGAGTGTGGCCATCTTCCAGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGG 7126 Query 21068 CACG---CCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 || | || || ||||| |||||| || || | | | || |||| |||||| Sbjct 7127 CAGGGTGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTCTCTATGGTGTCACTGGGCTC 7186 Query 21125 CGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 | |||| ||| |||||||||||||| | || || || || ||||||||||||| Sbjct 7187 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGA 7242 >seq66926 Length=10282 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | |||||| || | || Sbjct 10122 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 10181 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || || ||||||||||| ||| | |||||||||||| Sbjct 10182 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 10241 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC 21124 |||||| || || | ||| || |||| |||||| Sbjct 10242 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTC 10282 >seq34598 Length=32462 Score = 96.9 bits (106), Expect = 3e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| |||||||||||||| || || ||||| |||| | |||||| ||| | ||| Sbjct 8305 AGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTTGGACAGGGTCTGGCCATCC 8246 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 |||||||| ||||| ||| | || || ||||||||||| Sbjct 8245 TCCAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTC 8208 >seq50167 Length=24081 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 20965 GCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCT 21024 |||||| |||| ||||| || || || ||||| |||||| || || ||| |||||| Sbjct 16598 GCACCAGGGGCAAGGTGGAGTCTTTCTGGATGTTGTAGTCCAAAAGAGTGTGGCCGTCCT 16539 Query 21025 CCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGT 21081 ||||||||||||| ||| | || || |||| |||||| || ||||||| ||||| Sbjct 16538 CCAGCTGTTTGCCGGCAAATATCAGCCTCTACTGGTCAGATGGGACGCCTTTCTTGT 16482 >seq174526 Length=2783 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| |||||| ||||||| || || ||||| ||||| | | Sbjct 2663 CCACCACGCAGACGAAGTACCAGGTGCAAAATGGACTCTTTCTGGATGTTGTAGTCGGAC 2722 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 ||||| || | ||||||||||| |||| ||| | || || ||||||||||| Sbjct 2723 AGGGTCCGGCCATCCTCCAGCTGCTTGCTGGCAAATATCAGCCTCTGCTGGTC 2775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420455633309360