Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq125977 156 4e-33 seq141308 154 2e-32 seq55738 143 3e-29 seq93163 125 7e-24 seq66926 116 4e-21 seq224230 104 2e-17 seq31296 100 3e-16 seq68848 93.3 4e-14 seq172906 89.7 5e-13 seq177860 87.8 2e-12 seq148632 82.4 8e-11 >seq125977 Length=8618 Score = 156 bits (172), Expect = 4e-33 Identities = 211/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| | ||| | || || |||||||| || || | || ||||| |||||| || Sbjct 4208 GAGCCCTTACTGAGAGAAAATCCCCGCCGTTTTGTTGTCTTTCCCATTGAATACCATGAT 4267 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || |||||||| || |||||||| | |||||||||||||| Sbjct 4268 ATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACTGCTGAGGAGGTGGACCTC 4327 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||||||| | |||||| ||| | |||| || ||||| | ||||| || | Sbjct 4328 TCCAAGGATATTCAACACTGGGAAGCAC-TGAAACACGACGAGAGACATTTTATATCTTA 4386 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TT 116813 ||| ||||| || || || || || || | ||| ||||| || |||||||| ||| | || Sbjct 4387 CGTCCTGGCTTTCTTTGCGGCGAGTGATGTCATAGTCAATGAAAATCTGGTAGAGTGCTT 4446 Query 116814 TCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 | || || || || ||||| | ||||| || || ||||| ||||| || Sbjct 4447 TAGC-CAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCA 4494 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 ||||| |||||||||||||| || || ||||| ||||| || || ||||||||| || Sbjct 4942 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATT 5001 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGT 117210 ||| || |||||| | || || ||||||||||| || ||| || ||| |||| Sbjct 5002 AGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTGCAGGCACCTGGT 5057 >seq141308 Length=4330 Score = 154 bits (170), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || ||||| ||||||||| | || ||||| ||| Sbjct 4064 AATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAGGTCGAGCCCAG 4123 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | ||||| || ||||||||| | |||| Sbjct 4124 TGACACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACC 4182 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| || ||||| |||||||| || | |||||||| |||||||| Sbjct 4183 AGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACA 4242 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| ||| |||| ||||| || || ||||| | ||||| || Sbjct 4243 ACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGGGGTGG 4291 >seq55738 Length=16555 Score = 143 bits (158), Expect = 3e-29 Identities = 172/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| | ||| | || || |||||||| |||||| | || ||||| |||||| || Sbjct 6435 GAGCCCTTACTGAGAGAAAATCCCCGCCGCTTCGTGGTCTTTCCCATCGAATACCATGAT 6494 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| || |||||||| || |||||||| | |||||||||||||| Sbjct 6495 ATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAGGTGGACCTC 6554 Query 116696 TCCAAGGACACGAGCGACTGGG-AGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||||||| | |||||| ||||| |||| ||||| | ||||| || || Sbjct 6555 TCCAAGGATATTCAACACTGGGAAGCGC-TGAAACCGGACGAGAGACATTTTATATCTCA 6613 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 ||| ||||| || || || || || || ||||| ||||| || |||||||| Sbjct 6614 CGTCCTGGCATTCTTTGCGGCGAGTGATGGCATAGTCAATGAAAATCTGGT 6664 >seq93163 Length=7565 Score = 125 bits (138), Expect = 7e-24 Identities = 158/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| ||||||||| | || || || || Sbjct 7240 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 7181 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCC--CCGCG- 40803 | |||| | | | | | |||| || || | ||||||||||||| || || || Sbjct 7180 AGTGACACCATAGAGAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCACCCTGCCCCGC 7121 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| | |||||||| | |||||| |||||||| || | | ||| ||| || Sbjct 7120 GACCAGCAGCCACTCATCTTTGTGGGCAAGCAGCTGGAAGATGGCCACACTCTCTCTGAT 7061 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| ||||||||| ||| |||| ||||| || || Sbjct 7060 TACAGCATCCAGAAAGAGTCCACCCTGCACCTGGT 7026 >seq66926 Length=10282 Score = 116 bits (128), Expect = 4e-21 Identities = 120/156 (77%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| |||||| || || | ||||| || ||||||||| | |||||||| | || || Sbjct 10261 AACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGAGGCTGAT 10203 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || || ||||| |||||||| || | |||||||| |||||||||||||||||| || Sbjct 10202 CTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGA 10143 Query 40881 GGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||| ||||| || || ||||| | ||||| || Sbjct 10142 GTCCACCCTGCACCTGGTCCTGCGCCTCAGGGGTGG 10107 >seq224230 Length=2161 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || ||||||||||||||| | |||||||| |||||||||| || ||||| ||| |||| Sbjct 1796 GATAAAGAGGGCATCCCCCCTGACCAGCAGCGACTCATCTTTGCTGGCAAGCAGGTGGAA 1737 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| ||| ||| |||| ||||||||| | | |||| ||||| || || | Sbjct 1736 GATGGCCGCACTCTCTCCGATTACACCATCCAGAAAGGGTCCACCCTGCACCTGGTCCTC 1677 Query 40903 CGCTTGAGGGGCGGC 40917 || | ||||| ||| Sbjct 1676 CGTCTCAGGGGTGGC 1662 >seq31296 Length=16870 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || ||||||||||| |||| || || || | Sbjct 14672 ATGCAGATTTTCGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAGCCCTCA 14613 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || || | || || || || || || | || ||| Sbjct 14612 GACACTATAGAAAATGTCAAGGCCAAGATCCGGGATAAGGAAGGAATTCCTCCTGATCAG 14553 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| | | ||||| |||||||| || | || || | ||||||||| Sbjct 14552 CAGAGGCTGATCTTCCCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGCCTGACTACAAC 14493 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| |||||| |||| || ||||| |||||| Sbjct 14492 ATCCAAAAGGAGTCCACCCTTCATCTGGTGTTG 14460 >seq68848 Length=10048 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || | |||||| |||||||| | || ||| | || Sbjct 7494 AACATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCAAGCCC 7435 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| | || | ||||| || |||||||| | ||| Sbjct 7434 AGTGACACCATCGAGAATGTCAAGGCCGAGATCCAAGACAAGGAAGGCATCCCACCTGAC 7375 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || || | || ||||| |||||| | || || | ||||| ||||||| Sbjct 7374 CAGCAGAGGCTGATATTTGCAGGCAAGCAGCTGTAGGATGACTGGACCCTGTCCGACTAC 7315 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| || ||| |||| |||| | ||| | || || | |||||| Sbjct 7314 AACATCCA-AAAGAGTCCACTTTGCACTTGGTGCTTCGTCTGCGTGGCGGC 7265 >seq172906 Length=2851 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||||||||| || ||||| || ||||| ||||| || || || || || || || | Sbjct 1316 TGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCT 1375 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | |||||||||||||| || |||||| ||||| || ||| ||||| Sbjct 1376 GGCTGAAGAAGAGAGGCCTCATGCCCGGACTCACTTTCTCAAACGAACTGATCAGCAGGG 1435 Query 117162 ACGA 117165 | || Sbjct 1436 ATGA 1439 >seq177860 Length=2647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/217 (70%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| ||||||||||| || | || ||| || Sbjct 2364 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTTG 2423 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || |||| || | | || ||| Sbjct 2424 GACACCATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAGGAATTCTTC-CTGATCAG 2482 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG----ACTA 40865 | | || |||| ||| ||||| |||||||| || | || || || | | |||| Sbjct 2483 GAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATG-GC-CATACTTAGTGTCTGACTA 2540 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||||||| |||||| |||| || ||||| |||||| Sbjct 2541 CAACATCCAAAAGGAGTCCACACTTCATCTGGTGTTG 2577 >seq148632 Length=3950 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | || || || | ||| |||||||||| |||| || ||| || | Sbjct 151 ATGCAGATTTTCATGAAGACCCTTATGGGGAAAACCATCATGCTCGAGGTTGAACCCTCA 210 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||| |||||| || || | || || || || || | | || ||| Sbjct 211 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCGTCCTGATCAG 270 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || |||| || ||||| |||||||| || || | || | ||||||||| Sbjct 271 CAGAAGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGACCATACTTTGTCTGACTACAAC 330 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| |||||| ||| || ||||| |||||| Sbjct 331 ATCCAAAAGGAGTCCATCCTTCATCTGGTGTTG 363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512962153489600