Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq31296 109 5e-19 seq177860 86.0 5e-12 seq93163 84.2 2e-11 seq271237 82.4 7e-11 >seq31296 Length=16870 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||||| || | || ||||| ||||| |||||||| || Sbjct 14445 ACCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGG 14504 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || |||| | |||| || | ||||||||| ||||| Sbjct 14505 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGG 14564 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||| | | ||| || Sbjct 14565 AATTCCTTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAAC 14624 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 14625 CTCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq177860 Length=2647 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-- 118567 |||| || | | ||||||||||| || | ||| ||||| ||||| |||||||| || Sbjct 2593 TACCACCATGAAGTCTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAG 2534 Query 118568 GCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627 | | ||| | ||| || ||||| || |||||| |||| || | || |||||| || Sbjct 2533 ACACTAAGTATGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCAGG 2474 Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687 | | || ||||||| || || || || || | ||| | ||||||| | || Sbjct 2473 AAGAAT-TCCTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTC 2415 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || || | ||||| || || || || || || ||||||||||| Sbjct 2414 AACCTTGAGTGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 2364 >seq93163 Length=7565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/212 (69%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || ||| ||||||| | |||| | ||| || Sbjct 7026 ACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGGCCATCTTCC 7085 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTA---TGCCCTCCTTGTCT 118646 ||||| || || | ||||||| ||||||| ||| | || | ||||||| ||||| Sbjct 7086 AGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCCTCTTTGTCC 7145 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || || ||||| | || | |||||| || ||| ||||| | ||| | || Sbjct 7146 TGGATCTTGGCCTTAACATTCTCTATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 7205 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || || || || || ||||| Sbjct 7206 TTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 7237 >seq271237 Length=352 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||||| || | || ||||| ||||| |||||||| || || ||| || Sbjct 8 TCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCC 67 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || ||||| || ||||| |||| || | ||||||||| ||||| || || ||||| Sbjct 68 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 127 Query 118643 GTC 118645 || Sbjct 128 ATC 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431977410038320