Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq141308 118 7e-22 seq68848 109 4e-19 seq66926 91.5 9e-14 seq93163 89.7 3e-13 seq106596 86.0 4e-12 seq174526 82.4 5e-11 seq34598 82.4 5e-11 seq31296 82.4 5e-11 >seq141308 Length=4330 Score = 118 bits (130), Expect = 7e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || |||||||| ||||||||||||||||| ||| | || Sbjct 4277 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 4218 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || || |||| ||||||||| ||| | || |||||||| Sbjct 4217 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 4158 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | || | || | | ||||| |||| |||||||| Sbjct 4157 CTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 4098 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||| ||||||||||| Sbjct 4097 CTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 4065 >seq68848 Length=10048 Score = 109 bits (120), Expect = 4e-19 Identities = 161/227 (71%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||||||| ||| ||||| ||||| || ||||||||||||||| Sbjct 7266 CCGCCACGCAGACGAAGCACCAAGTGCAAAGTGGACTCTTT-TGGATGTTGTAGTCGGAC 7324 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | ||| || | || |||||||||||| || || |||| ||||||||| || Sbjct 7325 AGGGTCCAGTCATCCTACAGCTGCTTGCCTGCAAATATCAGCCTCTGCTGGTCAGGTGGG 7384 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| |||| ||| | || | || | || | | | ||| Sbjct 7385 ATGCCTTCCTTGTCTTGGATCTCGGCCTTGACATTCTCGATGGTGTCACTGGGCTTGACC 7444 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| | || || ||||||||||||||||| Sbjct 7445 TCAAGAGTGATGGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 7491 >seq66926 Length=10282 Score = 91.5 bits (100), Expect = 9e-14 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || |||||||| ||||||||||||||||| ||| | || Sbjct 10121 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 10180 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| |||||||||||| || || |||| ||||||||| ||| | || |||||||| Sbjct 10181 TTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 10240 >seq93163 Length=7565 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| ||| |||| || || || || | || Sbjct 7023 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGGCCATCT 7082 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCA---CGCTCTCCTTG 34294 |||| ||||||||| | || ||||| ||||||||||| ||||| || ||| ||| Sbjct 7083 TCCAGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCCTCTTTG 7142 Query 34295 TCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATG 34354 || ||||| ||| | || |||| | || | | || || |||| |||||| Sbjct 7143 TCCTGGATCTTGGCCTTAACATTCTCTATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 7202 Query 34355 GTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| || || ||||| ||||| ||||| Sbjct 7203 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 7237 >seq106596 Length=6504 Score = 86.0 bits (94), Expect = 4e-12 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| || |||||||| ||||| | | | || |||| |||||||||||| || Sbjct 5515 TCTTTCTGGATCTTGTAGTCAGACAGGGTGCAGACATCTTCCAGCTGCTTGCCTGCAAAG 5456 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||| ||| | || || ||||| |||||| ||| | | Sbjct 5455 ATTC-CCTCTGCTGGTCAGGGGGAATGCCCTTTTTGTCTTGGATCTTTGCCTTGACCTTC 5397 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||| || |||| |||||||| ||||| || || || | || | Sbjct 5396 TCAATAGTGTCTCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTGCATA 5337 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 5336 AAGATCTGCATC 5325 >seq174526 Length=2783 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||||||| ||| | |||||||| ||||||||||||||| Sbjct 2663 CCACCACGCAGACGAAGTACCAGGTGCAAAATGGACTCTTTCTGGATGTTGTAGTCGGAC 2722 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 || ||| | || |||| |||||||| || || || |||| ||||||||| Sbjct 2723 AGGGTCCGGCCATCCTCCAGCTGCTTGCTGGCAAATATCAGCCTCTGCTGGTC 2775 >seq34598 Length=32462 Score = 82.4 bits (90), Expect = 5e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||||||| ||||| |||||||| |||||||||| |||||| || | || Sbjct 8305 AGCACCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTTGGACAGGGTCTGGCCATCC 8246 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC 34275 |||| ||||||||| || || || |||| ||||||||| Sbjct 8245 TCCAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTC 8208 >seq31296 Length=16870 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || |||| |||||| || | || || || || ||||||||||| | | Sbjct 14446 CCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGC 14505 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || |||| ||||||||| | ||| || |||| |||||| || || Sbjct 14506 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGA 14565 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||| | || |||| | || | | || || Sbjct 14566 ATTCCTTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACC 14625 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||||||| || || || || ||||| || ||||||||| Sbjct 14626 TCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCATC 14673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321692084777600