Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq152803 95.1 1e-14 seq55738 93.3 4e-14 >seq152803 Length=3745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 || |||||| ||||| ||| ||||||||||| ||||| ||||| || ||||| |||||| Sbjct 1609 TGGTATTCAGAAACTCGCTTCTCAAAGAAATTCGTTTTCCCTTCCAACGAAATGTTTTCC 1668 Query 16007 ATAAAATCAAAAGGATTTTTTG 16028 ||||||||||| ||||||| || Sbjct 1669 ATAAAATCAAAGGGATTTTCTG 1690 >seq55738 Length=16555 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | ||| || ||||||||||| || ||||| ||||| ||||| || Sbjct 9265 TCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 9206 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| || ||||| ||||| || ||||| || || ||||| || Sbjct 9205 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGCC 9146 Query 16379 ACCAATCGCTCACC 16392 || | ||| || || Sbjct 9145 ACAACTCGTTCTCC 9132 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||||||||| || ||| | ||||| || | |||| ||| |||||||| ||||| || Sbjct 11124 ATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTT 11065 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||||||| ||||||||||||||| || ||||| ||||||| Sbjct 11064 CCCTTCTAGTGAAATATTTTCCATGAAGTCAAACGGATTTT 11024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 460485850556000