Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq39551 1169 0.0 seq41825 147 2e-30 seq96647 105 5e-18 >seq39551 Length=14816 Score = 1169 bits (1296), Expect = 0.0 Identities = 1045/1306 (80%), Gaps = 10/1306 (1%) Strand=Plus/Minus Query 107336 GAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGT 107395 |||||| || || | ||||| ||||| ||||||||||||| |||||||||||||| | Sbjct 7930 GAAGCTCTGTTGGCGCTATCATGTGTGGACCCTGGGCTGCTACATGCTGCTGGCCGTCAT 7871 Query 107396 TTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAG 107455 | |||||| ||| |||||||| | || ||||| | ||| | |||||||| | || | Sbjct 7870 TGCTCTGAAACTGTCCCTCAGACTGAAGTGTGACTTTGATGTCGTGGATCTGAACTCGAA 7811 Query 107456 GGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAA 107515 ||| || || | |||||||| ||||| | ||||||| | |||||||||||||||||| Sbjct 7810 GGAATTTCAAAACCAGCACTGCAGGGATTTCCTGTACAAGACCCTGAAGCTGCCAGCAAA 7751 Query 107516 GAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCT 107575 ||| ||||||||||||||||| |||| ||||| || ||| |||||||| ||||||| || Sbjct 7750 GAGGCCCATCAACTGTTCTGGGGTCACTCGAGGAGAGCAGAAAGCAGTGATCCAGGCTCT 7691 Query 107576 CCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAA 107635 || | |||||||| | ||||| |||||| ||| |||| | || | ||||| | Sbjct 7690 GCTGAATAACCTGGAGATTAAGAAGAAGCGGCAGCCCTTCACAGAGGCCGACTACCTTAG 7631 Query 107636 CATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAG 107695 ||| || ||||||||||| |||||| || |||||||||||||||||||| | ||||| Sbjct 7630 CATGACAGCAGACTGTGAGCAATTCAAGACCAAAAGGAAGTTCATACAGTTCTCGCTGAG 7571 Query 107696 TAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAA 107755 |||||||||| |||||||||||||| || || |||||||| ||||||||||| || || Sbjct 7570 TAAAGAAGAGGCCGACTTCCCCATTGCGTATTCCATGGTGGTTCATGAGAAGATCGAGAA 7511 Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 ||||||| |||||||||| || ||||| ||||||||||||||||||||||||||||||| Sbjct 7510 CTTTGAAAGGCTGCTGCGCGCTGTGTACACCCCTCAGAACATATACTGTGTCCACGTGGA 7451 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAA 107875 | ||||||||||| |||||||| |||| |||| ||||||| | || |||||||| || Sbjct 7450 TCAAAAGTCCCCAGAAACTTTCAAGCAGGCAGTCAGGGCCATTGTGTCATGCTTCCCAAA 7391 Query 107876 TGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGC 107935 |||||| || || |||||| |||| | ||||| ||||| ||||||||||| ||||| || Sbjct 7390 TGTCTTTATAGCTAGTAAGCTGGTGTCAGTGGTCTATGCTTCCTGGTCCAGGGTGCAGGC 7331 Query 107936 TGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAA 107995 |||||||||||| ||||||||||| ||||||| ||| ||||||||||| ||| | ||||| Sbjct 7330 TGACCTGAACTGCATGGAAGACTTACTCCAGACCTCCGTGCCATGGAAATACCTCCTGAA 7271 Query 107996 TACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGAT 108055 || || ||||||||||| ||||| ||||||||||| |||||||||| |||||||||| | Sbjct 7270 CACCTGTGGGACAGACTTTCCCATCAAGACCAATGCTGAGATGGTCCAGGCCCTCAAGCT 7211 Query 108056 GTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa----TC 108111 |||| || |||||||||||||||| |||||||| | ||| | |||| | Sbjct 7210 ACTGAATGGGCAGAACAGTATGGAGTCAGAGGTACCACC----CCCACATAAAAGGTCCC 7155 Query 108112 GCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACC 108171 |||||||||| | ||||||||||| ||||||| ||||| |||||||||| ||| || Sbjct 7154 GCTGGAAATATCACTATGAGGTGAAAGACACATTGTACAAGACCAGCAAGAGAAAGACCC 7095 Query 108172 CTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCT 108231 |||| ||| |||| || ||||||| || ||||||||||| | ||||| ||||||| || Sbjct 7094 CTCCGCCTAATAACATAACCATGTTTACTGGGAATGCCTACATGGTGGCTTCTCGAGACT 7035 Query 108232 TTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACA 108291 | | ||||||| ||| ||||| | ||| ||||| ||| ||||||||| ||||||| Sbjct 7034 TCATTGAACATGTATTAAACAACGCCAAAGCCCAACAACTAATTGAATGGGCAAAAGACA 6975 Query 108292 CCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCT 108351 |||| || || || || ||||| ||||||||||| || ||||| | ||||||||||| | Sbjct 6974 CCTACAGTCCTGATGAGCACCTTTGGGCCACCCTCCAACGTGCCTCCTGGATGCCTGGAT 6915 Query 108352 CTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCA 108411 | | ||| |||||||| | | || |||||||||||| || || || ||||| || Sbjct 6914 CAGCTCCCTTGCACCCCAAATTTGACCTCTCAGACATGAGAGCTATTGCAAGGCTAACCA 6855 Query 108412 AGTGGCAGTACCACGAGGGAGA-TGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGA 108470 |||||||| |||| |||||||| | || || ||||||||||| |||| || || ||| Sbjct 6854 AGTGGCAGGACCATGAGGGAGACATTGAGGAT-GGGGCGCCTTACACACCTTGTTCAGGA 6796 Query 108471 ATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAAC 108530 |||| | | |||| |||| ||||| ||| | ||||||||| ||||||| || |||||| Sbjct 6795 GTCCACCAGCGGGCTGTCTGTATTTATGGGTCTGGGGACCTGCACTGGATACTTCAGAAC 6736 Query 108531 CATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTA 108590 |||||||||||||| ||||||||||| || | |||||||||||| || || ||||| ||| Sbjct 6735 CATCACCTCTTGGCCAACAAGTTTGATCCAAAGGTGGATGATAATGTTCTTCAGTGTTTA 6676 Query 108591 GAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 || || || ||||||| || |||||||| ||||||||||| |||| Sbjct 6675 GAGGAATATTTACGTCACAAAGCCATCTACGGGACTGAACTGTGAG 6630 >seq41825 Length=16783 Score = 147 bits (162), Expect = 2e-30 Identities = 578/895 (65%), Gaps = 47/895 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||| ||| ||||||| ||||| || || || | ||||| ||| | || Sbjct 8229 CCCCTTAGTAAAGAGGAGGTAGACTTTCCCATCGCGTATTCCGTAGTGGTTCATCACAAA 8288 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| ||||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 8289 ATTGAAATGCTTGAAAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 8348 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || | ||| | || || || || | || |||| |||||| Sbjct 8349 CACGTGGACAAAAAAGCAGAGGAGCCCTTTTTAGCCGCAGTGATGGGCATTGCGTCCTGC 8408 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || || ||||| ||||||| || ||| || |||||||| |||||| | Sbjct 8409 TTGAAGAACGTCTTTGTGGCCAGCCAGCTGGAGAACGTCGTTTATGCGTCCTGGAGTCGG 8468 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || ||||| || ||||| ||| | ||| || | ||| | ||||| | ||||||| Sbjct 8469 GTTCAGGCTGATCTCAACTGCATGAAGGACCTG-TACAGCA-TGAGTGCAAACTGGAAGT 8526 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | || || |||| |||||||| || || ||||| || |||||| | Sbjct 8527 ACTTGATCAACCTTTGTGGGATGGACTTCCCTATTAAAACCAACCTGGAAATGGTCAGGA 8586 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGG---TACCTTCTGAGTCCa 108102 || ||| || |||| | |||| |||| ||||| | ||| | | || Sbjct 8587 AACTGAAGTCATTCCTGGGTGAAAACAACCTGGAAACTGAGAAGATGCCTCCAAA---CA 8643 Query 108103 aaaaaaaTCGCTGGAA--------ATACCGCTAT-GAGGTGA--CAGAC--ACACTGTAC 108149 | | | | ||||| | |||| | | || | || | ||| |||||| Sbjct 8644 AGGAGGAAAGGTGGAAGAAACGACACACCGTTGTCGATGGGAAGCTGACGAACACTG--- 8700 Query 108150 CCTACCAGCAAGATGAAGGACCCTCC--CCCTGATAATTTACCCATGTTCACAGGGAATG 108207 | | || | || || |||| | || | || | ||| |||| | || Sbjct 8701 -------GGGTGGCCAAAGCCCAGCCGCCCCTCACAACT--CCTCTTTTCTCAGGCAGTG 8751 Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAA 108266 |||| ||||||| | | | | | ||| |||| |||| || || |||| || Sbjct 8752 CCTACTTTGTGGTCAGTAGGGAATATGTAGGCTATGTGCTAGAAAATGGGAACATCCAAA 8811 Query 108267 AGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTT 108326 || | | || |||| | ||||| |||||||| || || |||||||||||||| | Sbjct 8812 AGT-TCATGGAGTGGGCACAGGACACGTATAGCCCAGATGAGTACCTCTGGGCCACCATC 8870 Query 108327 CAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTC 108382 || | | ||| || | | ||||| ||| | || ||||| |||||| || | || Sbjct 8871 CAAAG-GATCCCTGAAGTCCCTGGTTCTCTCCCCTCAAGCCAT---AAGTATGACTTGTC 8926 Query 108383 AGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCAT 108442 ||||||| ||| |||| ||| | ||||||||||||||| || || ||||| || Sbjct 8927 CGACATGAATGCTGTCGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAA 8986 Query 108443 GGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGC 108502 || || ||||| |||| ||| ||| ||||| | | || | ||| ||| ||| || Sbjct 8987 AGGCGCTCCTTACCCACCGTGCAGCGGAGTCCATGTGCGCTCCGTGTGCGTTTTCGGAGC 9046 Query 108503 CGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || ||| || |||||| || | || || ||| |||| || || ||||||||| Sbjct 9047 TGGTGACTTGAGCTGGATGCTTCGCAAACACCACTTCTTTGCCAATAAGTTTGAC 9101 >seq96647 Length=7276 Score = 105 bits (116), Expect = 5e-18 Identities = 195/278 (70%), Gaps = 10/278 (4%) Strand=Plus/Plus Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTA--TGCCCCTCAGAACATATACTGTGTCCACGTG 107813 ||||||| |||| | | ||| | || |||||| ||||| | ||||| || |||||| Sbjct 5086 CTTTGAAAGGCTCTTCAGGGCCATTTACATGCCCC--AGAACGTCTACTGCGTGCACGTG 5143 Query 107814 GATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CTGCTTCCC 107872 ||| |||| | |||||||||| || || || || || | ||| | ||||||||| Sbjct 5144 GATAAGAAGGCGTCAGAGACTTTTAAGGATGCCATCCAG-CAGTTACTAAGCTGCTTCCC 5202 Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932 ||||| |||| ||||| |||| | | ||| | ||||| || ||| | | || Sbjct 5203 CAATGCCTTCCTGGCCTCTAAGACAGAGGCCGTGATCTATGCTGGCTTCTCCCGGCTCCA 5262 Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAG-AGCTCA-GTGCCATGGAAGTACTTA 107990 || ||||||||||| |||||||| || | || || | || || ||||||| | Sbjct 5263 GGCAGACCTGAACTGCATGGAAGATCTGGT--AGCCTCTGAGGTCCCCTGGAAGTTTGTC 5320 Query 107991 CTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 ||||| || |||||| ||||||||| | || ||||| Sbjct 5321 CTGAACACCTGCGGGCAGGACTTCCCCCTGAAAACCAA 5358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346781263418040