Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq89429 125 6e-24 >seq89429 Length=9158 Score = 125 bits (138), Expect = 6e-24 Identities = 290/432 (67%), Gaps = 10/432 (2%) Strand=Plus/Plus Query 19987 GGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGAAATGAATTT 20046 || ||||| || || || || || || ||||| | | ||| ||| ||||| |||||||| Sbjct 4033 GGCACTGGCACCTTGTCGGTGTTAGGCATGCAGGCGCCATAGAACCTGAGAGATGAATTT 4092 Query 20047 CCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTT 20106 || | | || || ||||| || || ||||| | ||| | | ||||| | |||||| Sbjct 4093 CCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGATGTTTTAAAGGAGTTGCTGTGGTTT 4152 Query 20107 ATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCA 20166 || || ||||| |||| | ||| || || | |||||||| | || ||| || Sbjct 4153 ATCAAGGGATCCACAATTGCTAAAGAACTGGCCTCCAAAGGAGTGAGAATCTGGGATGCC 4212 Query 20167 CATGGATCTAAGCAATTTTTACACAGCAATGGATT---TGACAACCGTCAAGAGGGGGAT 20223 |||| || | ||| | |||||| ||||| || ||| | || || ||| | Sbjct 4213 AATGGGTCCCGAGATTTTCTGGACAGCATGGGATTCTCTG-CAA--GACAGGAAGGGAAG 4269 Query 20224 TTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAAC 20283 |||| || || ||||| || || | ||||||||||||| | || || || ||| | Sbjct 4270 CTGGGCCCAGTTTATGGTTTCCAGTAGAGACATTTTGGATCAGACTACAAAGATATGGAT 4329 Query 20284 ACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACG 20343 || |||| | | ||||||||||| | | ||||| || ||| | | | ||||| Sbjct 4330 TCAGATTACTCGAGTCAAGGAGTAGACGAGCTGCAAAAAGTGATTGA--CACTCAAAACC 4387 Query 20344 AACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATG 20403 | || |||| |||||||| || ||| | | ||||| | |||||| | || | ||| Sbjct 4388 AGTCCTGACGAGAGAAGAAT--CTTGATGTGTCCGGAACCCAAAAGATCTTCCCCTGATG 4445 Query 20404 GCTTTGCCTCCA 20415 || | |||||| Sbjct 4446 GCACTTCCTCCA 4457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397478992824700