Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq141308 116 3e-21 seq93163 91.5 1e-13 >seq141308 Length=4330 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| |||||||||||| ||| ||| | || ||| Sbjct 4273 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 4214 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || |||| || ||| ||||| || || | || ||||||||| Sbjct 4213 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 4154 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | ||| ||||||| ||| || |||||| Sbjct 4153 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTG 4094 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| |||||||| ||||| ||||| Sbjct 4093 CCTGTCAGGGTCTTCACGAAGATCTGCAT 4065 >seq93163 Length=7565 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| ||| |||| || || | | | || ||| Sbjct 7026 ACCAGGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCAGAGAGAGTGTGGCCATCTTCC 7085 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACA---CCCTCCTTGTCC 45244 || || || || | || || | |||| |||||| | |||| ||||| |||||| Sbjct 7086 AGCTGCTTGCCCACAAAGATGAGTGGCTGCTGGTCGCGGGGCAGGGTGCCCTCTTTGTCC 7145 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || |||||| | | | | |||| | ||||||||||| ||| || ||| Sbjct 7146 TGGATCTTGGCCTTAACATTCTCTATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 7205 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 ||||| ||||| |||||||| ||||||||||| ||| || Sbjct 7206 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTGACT 7244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393387742459660