Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq125977 136 4e-27 seq55738 82.4 7e-11 >seq125977 Length=8618 Score = 136 bits (150), Expect = 4e-27 Identities = 185/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 14290 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14349 ||| ||||||| || || || || || ||||| || || || || |||||| | || | Sbjct 4824 CCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCCAC 4765 Query 14350 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttt 14409 | |||||||||| | | || | ||||| | ||||| ||||| | | || Sbjct 4764 AACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCCTT 4705 Query 14410 ttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACT 14469 ||||| | | || |||||| ||||||||||| || | || |||| ||||||| | | Sbjct 4704 CTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATC 4645 Query 14470 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14529 | |||||| || ||||| || | || ||||||||||| |||||||||||||| || || Sbjct 4644 TTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCAAT 4585 Query 14530 CTGAAAACCATAAAAACA 14547 || || ||||| ||||| Sbjct 4584 TTGGAAGCCATAGAAACA 4567 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| ||||| || | ||||||||||| |||||||| ||||| |||||||| | Sbjct 5036 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGG 4977 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTG 14300 || ||||||| ||| ||||| || | ||| ||||||| Sbjct 4976 CCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTG 4940 >seq55738 Length=16555 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 13859 AAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGA 13918 || ||| |||| || | ||| ||| || || || || || || ||||| | ||| Sbjct 11159 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 11100 Query 13919 TATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13978 || || | |||| || ||||||||||| || || ||||| ||||| ||||||||||| Sbjct 11099 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 11040 Query 13979 AAATCAAATGGATTT 13993 || ||||| |||||| Sbjct 11039 AAGTCAAACGGATTT 11025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 480232564512800