Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq141308 96.9 3e-15 >seq141308 Length=4330 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||||| || || | |||| Sbjct 4276 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 4217 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| || || || || || ||| | ||||||||| || Sbjct 4216 TCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 4157 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | | | ||||||| ||||||| || | ||||||| | Sbjct 4156 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 4097 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||| || || || || || |||||| Sbjct 4096 TTGCCTGTCAGGGTCTTCACGAAGATCTGCATT 4064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377723734052700