Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18550 125 6e-24 seq31296 118 9e-22 seq141308 104 2e-17 seq148632 95.1 1e-14 seq177860 89.7 5e-13 seq68848 84.2 2e-11 >seq18550 Length=27441 Score = 125 bits (138), Expect = 6e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| ||||| || ||||| || || || ||| Sbjct 6879 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTG 6938 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 6939 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 6998 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 6999 CCTGTCTCTGTCTGAGACTCAATGATGGC 7027 >seq31296 Length=16870 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || ||||| ||||| ||||| |||| ||||| || || Sbjct 14672 ATGCAGATTTTCGTGAAGACCCTTACAGGGAAAACCATCACGCTCGAGGTTGAGCCCTCA 14613 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| |||||||| | || || || ||| Sbjct 14612 GACACTATAGAAAATGTCAAGGCCAAGATCCGGGATAAGGAAGGAATTCCTCCTGATCAG 14553 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||| ||||||| ||| ||||||| ||| || || || ||| Sbjct 14552 CAGAGGCTGATCTTCCCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGCCTGACTACAAC 14493 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||| || || || ||||||||||| | ||||| Sbjct 14492 ATCCAAAAGGAGTCCACCCTTCATCTGGTGTTGAGACT 14455 >seq141308 Length=4330 Score = 104 bits (114), Expect = 2e-17 Identities = 168/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 31182 TTGAATCAAACA-TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGAC 31240 ||||| || ||| |||| || ||||| ||||| ||||||||||| || |||||| | || Sbjct 4054 TTGAA-CAGACAATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAG 4112 Query 31241 GTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTG 31300 || || || |||| |||| | ||||| | || ||||||||||||| | Sbjct 4113 GTCGAGCCCAGTGACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATC 4172 Query 31301 CCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATG 31360 || || ||||||||| | || || || || ||||| ||| ||||||| || || Sbjct 4173 CCCCCTGACCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACCCTG 4232 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || ||||| || || || || ||||| || | || ||||| || Sbjct 4233 TCCGACTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGGGGTGG 4291 >seq148632 Length=3950 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||| | ||||| || | || ||||| |||| |||| |||||||| || Sbjct 151 ATGCAGATTTTCATGAAGACCCTTATGGGGAAAACCATCATGCTCGAGGTTGAACCCTCA 210 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| |||||||| | | || || ||| Sbjct 211 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCGTCCTGATCAG 270 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT-CTATGACTATGAGCGATTATAA 31371 ||| || || || |||||||| ||| ||||||| | || ||| || || || || Sbjct 271 CAGAAGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGACCAT-ACTTTGTCTGACTACAA 329 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||| ||||| || || | ||||||||||| | ||||| Sbjct 330 CATCCAAAAGGAGTCCATCCTTCATCTGGTGTTGAGACT 368 >seq177860 Length=2647 Score = 89.7 bits (98), Expect = 5e-13 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||| ||||| || | |||||||| | Sbjct 2364 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACACTCAAGGTTGAACCCTTG 2423 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| ||||| | || ||| ||||| || | | || || ||| Sbjct 2424 GACACCATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGA-GGAATTCTTCCTGATCAG 2482 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT-CTATGACTA-TGAGCGATTATA 31370 || | || || ||||||||||| ||| ||||||| | || || || || || | Sbjct 2483 GAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCATACTTAGTGTCTGACTACA 2542 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||| ||||| || || || ||||||||||| | ||||| Sbjct 2543 ACATCCAAAAGGAGTCCACACTTCATCTGGTGTTGAGACT 2582 >seq68848 Length=10048 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/234 (69%), Gaps = 9/234 (4%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| |||| ||||| || ||||| | || || | || Sbjct 7494 AACATGCAGATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTTGAGGTCAAGCCC 7435 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 |||| |||| | ||||| | |||| | |||||||||||| | || || || Sbjct 7434 AGTGACACCATCGAGAATGTCAAGGCCGAGA-TCCAAGACAAGGAAGGCATCCCACCTGA 7376 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACA---GTTGGAAGACTCTATGACTATGAGCGA 31365 ||||||| | || ||||| || ||||| || || ||| |||| ||| || ||| Sbjct 7375 CCAGCAGAGGCTGATATTTGCAGGCAAGCAGCTGTAGGATGACT---GGACCCTGTCCGA 7319 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || |||| || |||||| || ||| | || |||| ||| | ||| | ||||| Sbjct 7318 CTACAACA-TCCAAAAGAGTCCACTTTGCACTTGGTGCTTCGTCTGCGTGGCGG 7266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443813608843200