Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq55738 86.0 1e-11 seq11430 86.0 1e-11 >seq55738 Length=16555 Score = 86.0 bits (94), Expect = 1e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 101909 GAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCC 101968 |||| | |||| ||||||||||| || ||||| |||||||| ||| | || ||||| Sbjct 9135 GAACGAGTTGTGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCA 9194 Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 || |||||| ||||||| |||| | ||||||| || || | ||||||||| | ||| Sbjct 9195 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAATGAGCTTATT 9254 >seq11430 Length=26483 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 35567 GATCTTCACCTTATGGCTCTTCCTCCATGCCACATGA-CTGCTCAATTTTATGTGGCTAA 35625 ||||||| ||| ||||| || ||||| |||||| ||| |||||| ||||| || || Sbjct 7708 GATCTTCCCCTGATGGCACTGCCTCCTTGCCACGCCCTCTG-TCAATTCTATGTAGCGAA 7650 Query 35626 TGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTT 35685 ||| || |||| |||||| | || ||| | |||||| | || ||||||||||||| Sbjct 7649 TGGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTT 7590 Query 35686 CAATATTGC 35694 ||| ||||| Sbjct 7589 CAACATTGC 7581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 985140501889300