Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq125977 156 5e-33 seq36452 111 2e-19 seq84296 107 2e-18 seq18550 107 2e-18 seq55738 102 1e-16 seq42668 96.9 4e-15 seq172906 93.3 5e-14 seq65805 86.0 8e-12 >seq125977 Length=8618 Score = 156 bits (172), Expect = 5e-33 Identities = 191/260 (73%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||| ||||| || || || || || || |||||||| |||||||| |||||| |||| Sbjct 4826 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCC 4767 Query 33726 ATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCC 33782 | || || |||||||| | | | |||| ||||| | ||||| ||||| Sbjct 4766 ACAACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCC 4707 Query 33783 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 33842 |||||||| ||| ||||||| || || || ||||| |||||||| | | || || | Sbjct 4706 TTCTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAA 4647 Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||||| ||||| || || | || || |||||||| ||||| |||||||| ||||| Sbjct 4646 TCTTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCA 4587 Query 33903 ATCTGAAATCCGTAGAAACA 33922 || || || || |||||||| Sbjct 4586 ATTTGGAAGCCATAGAAACA 4567 >seq36452 Length=40126 Score = 111 bits (122), Expect = 2e-19 Identities = 174/244 (71%), Gaps = 9/244 (4%) Strand=Plus/Minus Query 31311 AAACC-CTTGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTCAAGTTCTGGAT 31369 ||||| | ||| ||||| | ||| |||| || | || |||||| |||| |||||| Sbjct 26947 AAACCTCCTGAGCTCCTTTCAGTGT--TATCCAGTGTTTCAACTTCT--AAGT-CTGGAT 26893 Query 31370 AATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTATTTACATTAAACGTAC 31429 || | || |||| | | || ||||| || || | ||| || | ||||| | |||| | Sbjct 26892 AAAAAATTCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTTACTTCAAACTTCT 26833 Query 31430 ATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTCGTCTATTACAC 31489 ||||||| |||| || | || || || ||||| ||||||||||||||||| |||| Sbjct 26832 CTTTTCCAAAGTTAAACAGCACAACACCAATATTTCCTCTATAATCTTCGTCTATGACAC 26773 Query 31490 CGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGAGCTATTCTACCAT 31546 || |||||| ||| || | |||| | || ||||||| | ||||| ||| |||| Sbjct 26772 CGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGAAGCTACTCTTCCAT 26713 Query 31547 AGCA 31550 |||| Sbjct 26712 AGCA 26709 >seq84296 Length=8374 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||||||| | ||| | |||||||| || ||||||||||||| ||| Sbjct 2676 GTTACTTTCTATGATGTATACCTGGTTCTGCAAGCTTTTATACTGACTACTGCAGTCTTT 2735 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||||| | | ||||||||| ||||||||||||||||| ||| ||| | |||| Sbjct 2736 CTTGGCTTGACTGCCTATACTCTACAGTCAAAGAGAGATTTCAGCAAATTTGGAGCAGG 2794 >seq18550 Length=27441 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2463 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2522 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| ||| ||||| ||||| ||||| ||||| || || | | |||| Sbjct 2523 GACTCATTATTCCCCAGAATCTGAGCGGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2582 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 2583 CTGTTTCTTATACCATA 2599 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/193 (72%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 62626 CATATGTATCATATGGTCC---TTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCAC 62682 |||| || ||||| ||||| |||||| ||||| | ||| || || || || || | Sbjct 5800 CATACGTTTCATAGGGTCCACATTCCTTG---GCTAGGTCACAGCTGGCTTCCAAAGCTC 5856 Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 | |||||||| ||||||||||| | |||||| | || ||||| ||||| ||||| | Sbjct 5857 CATAATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTTTCAAAGG 5916 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | || | | || || || || || |||| ||||| || ||||| || || |||| || Sbjct 5917 GGTACCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGTCGAT 5976 Query 62803 GTCTCTTATTAGA 62815 | | ||||| || Sbjct 5977 GGCGTTTATTTGA 5989 >seq55738 Length=16555 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | || || ||||| || || || ||||| || || || || | Sbjct 9267 CCTCATCTCTGCTAATAAGCTCATTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 9208 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || || |||||||| |||||||| |||||||||| Sbjct 9207 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGG 9148 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||||| Sbjct 9147 CCACAACTCGTTCTCC 9132 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/134 (74%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 33240 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 33296 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 11159 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 11100 Query 33297 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33356 || || ||||| || || || || || || || || ||||| | ||| |||||||||||| Sbjct 11099 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 11040 Query 33357 AAATCAAACGGATT 33370 || ||||||||||| Sbjct 11039 AAGTCAAACGGATT 11026 >seq42668 Length=14146 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 540 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 481 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || |||||||||||||| || || || || |||||||| || | | |||| Sbjct 480 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTCT 421 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 420 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 370 >seq172906 Length=2851 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || || || || || | |||||| || || |||||||||||||| ||||| | ||| || Sbjct 1439 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1380 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| || || | ||| ||||| || || ||||| | ||||| || ||||||||||| Sbjct 1379 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 1321 >seq65805 Length=10421 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||||||||||||||| ||||||||||| | ||||| ||||| || |||||||||||| Sbjct 5416 TGCTCCTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCCTCGGCCAGCGTGCAC 5475 Query 188232 ATACGAATGG 188241 || || |||| Sbjct 5476 ATCCGCATGG 5485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627058526548800