Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq172906 96.9 3e-15 seq125977 96.9 3e-15 seq18550 84.2 2e-11 seq55738 82.4 7e-11 >seq172906 Length=2851 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| || || || || ||||| || || || || | ||||||||| | |||| || | Sbjct 1441 CTTCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1382 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||| || |||||||||||||| ||||| ||||| | || ||||| || ||||| | Sbjct 1381 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 1322 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 1321 CCACCACTCTTTCCCC 1306 >seq125977 Length=8618 Score = 96.9 bits (106), Expect = 3e-15 Identities = 180/260 (69%), Gaps = 7/260 (3%) Strand=Plus/Minus Query 11716 CCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTAC 11775 ||| ||||| | ||||| || ||||| ||||| || || || ||||| ||| | || || Sbjct 4824 CCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCCAC 4765 Query 11776 TACTCTTTCTCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTT 11832 |||| ||||||||| || ||| ||| ||||| |||||| | || || Sbjct 4764 AACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCCTT 4705 Query 11833 CTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATT--A 11890 |||||| || | |||||| || ||||| || || | || ||| ||| | | | Sbjct 4704 CTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGAT--ATTCCCTCTCTTTGGAA 4647 Query 11891 TCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCT 11950 ||| | | || || || || | | || |||||||| ||||| || |||||||| || Sbjct 4646 TCTTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCA 4587 Query 11951 ATTTGAAATCCATAGAAACA 11970 ||||| || ||||||||||| Sbjct 4586 ATTTGGAAGCCATAGAAACA 4567 >seq18550 Length=27441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || || || | || || || || || || || || |||||| Sbjct 2463 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2522 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || |||||||||||||| || || || | Sbjct 2523 GACTCATTATTCCCCAGAATCTGAGCGGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2582 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 2583 CTGTTTCTTATACCAT 2598 >seq55738 Length=16555 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367 ||||||| || ||||| | |||||||||| | ||||| || | ||||| || || Sbjct 11136 ATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAA 11077 Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 || || ||||| ||||||||||| |||| ||||| ||| ||| ||||| | ||| || Sbjct 11076 GAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATGAAGTCAAACGGATTTTCTACTTT 11017 Query 11428 GAA 11430 ||| Sbjct 11016 GAA 11014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466472309982400