Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq125977 174 2e-38 seq84296 147 3e-30 seq18550 113 6e-20 seq36452 102 1e-16 seq172906 98.7 1e-15 seq59957 98.7 1e-15 seq42668 96.9 5e-15 seq65805 86.0 8e-12 >seq125977 Length=8618 Score = 174 bits (192), Expect = 2e-38 Identities = 195/260 (75%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||| ||||| || ||||| || ||||| ||||| || |||||||| || ||| |||| Sbjct 4826 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCC 4767 Query 36302 ATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCC 36358 | || || |||||||| | | | |||| ||||| | ||||| ||||| Sbjct 4766 ACAACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCC 4707 Query 36359 TTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTA 36418 |||||||| ||| ||||||||||||| |||||||| |||||||| | | || || | Sbjct 4706 TTCTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAA 4647 Query 36419 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 36478 ||||||| || || ||||| | || || |||||||| ||||| |||||||| ||||| Sbjct 4646 TCTTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCA 4587 Query 36479 ATTTGAAATCCGTAGAAACA 36498 ||||| || || |||||||| Sbjct 4586 ATTTGGAAGCCATAGAAACA 4567 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||||| || || || || ||||||| |||||| ||||| ||||| | |||||||||| Sbjct 5044 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 4985 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 36255 | || || || ||||| || || || || || ||||| ||||| || Sbjct 4984 ATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGA 4939 >seq84296 Length=8374 Score = 147 bits (162), Expect = 3e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || |||||| | |||||| || | | ||||| |||| |||||||||||| | || Sbjct 6004 TTACTTTTTATTAACTGCTTCCAGAAACCGCAACAGGTGCAGGAACAGATTGATAACGTC 5945 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| | |||| | ||||||||||| ||||| || || ||||| | || || || Sbjct 5944 CAAGTAGAGACTGATGGCAGCTAACACATACTCTTCGGGAGACAGCTTGTACATCAGCGA 5885 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| || |||||||| || ||||| ||||| | ||||| || | || || || ||||| Sbjct 5884 GTGTGTATCATAGATGATAAATCCACAGAAAAGAAGGGTGCCTAGAGAAGCCAAGACCAA 5825 Query 9407 CTCCACTGTTTCACTTTGCACAAA 9430 ||||| ||||||| || | ||| Sbjct 5824 TTCCACCATTTCACTATGGAAAAA 5801 Score = 143 bits (158), Expect = 3e-29 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||||||||||||||| ||||||||||| ||||||| ||||| Sbjct 2794 CCTGCTCCAAATTTGCTGAAATCTCTCTTTGACTGTAGAGTATAGGCAGTCAAGCCAAGA 2735 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || |||||||||| ||| | | ||||||||||||||||| Sbjct 2734 AAGACTGCAGTAGTCAGTATAAAAGCTTGCAGAACCAGGTATACATCATAGAAAGTAAC 2676 >seq18550 Length=27441 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2463 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2522 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| ||| ||||| ||||| ||||| ||||| || || | | |||| Sbjct 2523 GACTCATTATTCCCCAGAATCTGAGCGGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2582 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 2583 CTGTTTCTTATACCATA 2599 Score = 105 bits (116), Expect = 9e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 19225 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 19284 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || || || | |||||| | || || ||| | || || |||||||| |||| Sbjct 19285 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 19344 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || |||||| | || | |||||||| || ||||| Sbjct 19345 GTTCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCAT 19390 >seq36452 Length=40126 Score = 102 bits (112), Expect = 1e-16 Identities = 173/244 (71%), Gaps = 9/244 (4%) Strand=Plus/Minus Query 33912 AAACC-CTTGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTTCAGTTCTGGAT 33970 ||||| | ||| ||||| | ||| |||| || | || |||||| ||| |||||| Sbjct 26947 AAACCTCCTGAGCTCCTTTCAGTGT--TATCCAGTGTTTCAACTTCTA--AGT-CTGGAT 26893 Query 33971 AATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTTACATTGAATGTAC 34030 || | || |||| | | || ||||| || || | ||| || | ||||| | || | Sbjct 26892 AAAAAATTCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTTACTTCAAACTTCT 26833 Query 34031 ATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCTTCGTCTATTACAC 34090 ||||||| |||| || | || || |||||||| ||||||||||||||||| |||| Sbjct 26832 CTTTTCCAAAGTTAAACAGCACAACACCAATATTTCCTCTATAATCTTCGTCTATGACAC 26773 Query 34091 CGCCTCCTATATCAAT-ACCT--TTTAGGGACAGACCAGACCTAGGAGCTATTCTACCAT 34147 || |||||| ||| || | | |||| | || ||||||| | ||||| ||| |||| Sbjct 26772 CGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGAAGCTACTCTTCCAT 26713 Query 34148 AGCA 34151 |||| Sbjct 26712 AGCA 26709 >seq172906 Length=2851 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || || || || || | |||||| || || |||||||||||||| ||||| | ||| || Sbjct 1439 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1380 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||| || || | |||||||| ||||| ||||||| ||||| || || |||||||| Sbjct 1379 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 1321 >seq59957 Length=11192 Score = 98.7 bits (108), Expect = 1e-15 Identities = 169/242 (70%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 167304 TAGAGAATGAGATAGAAAAGCGTATCAGACGACTTCATGTTGTACATTTCTGTGAGAAAA 167363 |||||| ||| ||||| ||| | ||||||| || | ||| | || |||||||||||| Sbjct 2977 TAGAGAGTGAAATAGAGAAGTGCATCAGACAGCTGCTTGTCGGTCACTTCTGTGAGAAAC 2918 Query 167364 AAGAGGATATCAAATACGCATGTAGATTCATCAAGGTATATAAACCTGGGGAGGAGACTA 167423 ||||| | || | ||| |||| | ||||||| || ||| ||| |||| | | Sbjct 2917 AAGAGAAGATGAGGTACACATGCAAATTCATCCCAGTCCATAGACC---GGAGCCGTGTG 2861 Query 167424 CCTCGACATACGTGTGCGCTATCAAAGTGGAAAGATGTTGCTGTGCTGTGTTTACAGATT 167483 | |||| || || || ||| |||||| |||| ||||||||||||||| | | Sbjct 2860 C----TCATATGTCTGTGCACTCAGAGTGGAGAGATTCTGCTGTGCTGTGTTTGCTGCAG 2805 Query 167484 GGCCAGAATCATGGTATATGG-ATACTAGTGGTATCAAGAAGTATTCTCCAGATGAATGG 167542 ||| || || ||| | ||| | || || ||| | ||||||| | | |||| |||||| Sbjct 2804 TGCCTGAGTCCTGGCACGTGGAAGACAAG-GGTGTGAAGAAGTTTACCTCAGAGGAATGG 2746 Query 167543 GT 167544 || Sbjct 2745 GT 2744 >seq42668 Length=14146 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 540 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 481 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || |||||||||||||| || || || || |||||||| || | | |||| Sbjct 480 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTCT 421 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 420 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 370 >seq65805 Length=10421 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| || ||||| ||||||| ||||||||||| ||||||| Sbjct 5485 CCATGCGGATGTGCACGCTGGCCGAGGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 5426 Query 9907 TGGAGGAGCA 9916 |||||||||| Sbjct 5425 TGGAGGAGCA 5416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655289509506400