Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq11430 127 2e-24 seq89429 120 3e-22 >seq11430 Length=26483 Score = 127 bits (140), Expect = 2e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 ||||| |||| ||| || |||| || || || ||||| |||||||| ||||| || || Sbjct 7536 AGGCCTGTGATGTGTGCAATCACGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 7595 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || |||||||| || | ||||||||||| |||||||| ||||||||||| || Sbjct 7596 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGCT 7655 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 || || || ||||| | |||| |||||||| || |||||| | | || || | |||| Sbjct 7656 ACATAGAATTGACAGAGGGCGTGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTGAGGGG 7715 Query 21171 TTC 21173 || Sbjct 7716 GTC 7718 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 21439 CCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTA 21498 || |||||||||||||||||||||||| |||||| |||| ||||| | |||||| || | Sbjct 15353 CCTTGATAAACCACAGCAACTCCTCCAAAACGCCCTTCCAGAACACTCGTTTGGTTGTGA 15412 Query 21499 ACAGAGGAAACTCGTC 21514 ||||||||| || || Sbjct 15413 GCAGAGGAAATTCATC 15428 >seq89429 Length=9158 Score = 120 bits (132), Expect = 3e-22 Identities = 208/300 (69%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 |||| || | |||||||||||| ||||||| || || || || ||||| | || || Sbjct 4318 TGTAGTCTGATCCAAAATGTCTCTACTGGAAACCATAAACTGGGCCCAGCTTCCCTTCCT 4259 Query 21340 GGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATT 21398 | | | ||| ||| || | ||| ||| | |||||||| | || ||||| ||| Sbjct 4258 GTCTTGCAGAGAATCCCAT-GCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATT 4200 Query 21399 TTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAAC 21458 | || || | | |||||| | | ||||| ||| ||||||||||||||||| Sbjct 4199 CTCACTCCTTTGGAGGCCAGTTCTTTAGCAATTGTGGATCCCTTGATAAACCACAGCAAC 4140 Query 21459 TCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTG 21518 |||| | || || |||| ||||| | |||||| || | ||||||||| || || || Sbjct 4139 TCCTTTAAAACATCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTC 4080 Query 21519 AGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCC 21578 ||||| ||| | ||||| | || ||||| ||| |||||| |||| | ||||||| Sbjct 4079 AGGTTCTATGGCGCCTGCATGCCTAACACCGACAAGGTGCCAGTGCCCATGTGGTCCTCC 4020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425948869780800