Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq125977 95.1 9e-15 seq172906 87.8 1e-12 seq55738 84.2 2e-11 >seq125977 Length=8618 Score = 95.1 bits (104), Expect = 9e-15 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 22798 ATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATT 22857 ||||||||||| |||||||| || ||||| || | | |||||||||||| | ||| Sbjct 4942 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATT 5001 Query 22858 AGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAAC 22917 ||| | || || ||| |||||||||||||||| || || ||| ||||| ||| | || Sbjct 5002 AGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTGCAGGCACCTGGTATAC 5061 Query 22918 AAACCGT 22924 || |||| Sbjct 5062 AAGCCGT 5068 >seq172906 Length=2851 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| || || |||||||| | || |||||||||||||| || || ||||||| Sbjct 1319 TGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCATTTGCTGCTATCTTCTGGC 1378 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| | |||||||| || | | || || ||||| |||| ||| | || | Sbjct 1379 TGAAGAAGAGAGGCCTCATGCCCGGACTCACTTTCTCAAACGAACTGATCAGCAGGGATG 1438 Query 22868 AAG 22870 ||| Sbjct 1439 AAG 1441 >seq55738 Length=16555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| || | || ||||| || ||||| | |||||||||| Sbjct 9145 TGGCCTTTGCTGCTGTAGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGC 9204 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | | |||||||| ||| | |||||| | || | Sbjct 9205 TCAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAATGAGCTTATTAGCAGAGATG 9264 Query 22868 A 22868 | Sbjct 9265 A 9265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354712043915380