Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq125977 165 1e-35 seq172906 107 3e-18 seq36452 104 3e-17 seq18550 104 3e-17 seq42668 102 1e-16 seq59957 89.7 7e-13 >seq125977 Length=8618 Score = 165 bits (182), Expect = 1e-35 Identities = 193/260 (74%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| ||||| || ||||| || ||||| |||||||| |||||||| || ||| |||| Sbjct 4826 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCC 4767 Query 50104 ACAAGTCTCTCTCCATAACTGGCGC---TGTCATGTATCCACTTTTGAGCCCAATCGGCC 50160 |||| || |||||||| | || |||| ||||| | ||||| ||||| Sbjct 4766 ACAACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCC 4707 Query 50161 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 50220 |||||||| ||| ||||||| || || || ||||| |||||||| | | || || | Sbjct 4706 TTCTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAA 4647 Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 ||||||| ||||| || || | || || |||||||| ||||| |||||||| ||||| Sbjct 4646 TCTTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCA 4587 Query 50281 ATCTGAAATCCGTAGAAACA 50300 || || || || |||||||| Sbjct 4586 ATTTGGAAGCCATAGAAACA 4567 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 |||||| || || || || ||||| | |||||| ||||| ||||| || |||||||||| Sbjct 5044 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 4985 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGA 50057 | || || || ||||| || || || || || ||||| ||||| || Sbjct 4984 ATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGA 4939 >seq172906 Length=2851 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 49984 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 50043 || || || || || |||||||| || || |||||||||||||| ||||| | ||| || Sbjct 1439 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1380 Query 50044 AGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCA 50103 ||||| || || | |||||||||||||| ||||| | ||||| || || |||||||| Sbjct 1379 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 1320 Query 50104 ACAAGTCTCTCTCC 50117 || | ||| || || Sbjct 1319 ACCACTCTTTCCCC 1306 >seq36452 Length=40126 Score = 104 bits (114), Expect = 3e-17 Identities = 180/257 (70%), Gaps = 10/257 (4%) Strand=Plus/Minus Query 47703 TCCAGTTGATCCAAACCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 |||||| || | || ||| ||||||||| | ||| |||| || | || ||||| Sbjct 26960 TCCAGTGGAGCAGAAACCTCCTGAGCTCCTTTCAGTGT--TATCCAGTGTTTCAACTTCT 26903 Query 47761 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 47820 ||| |||||||| | || |||| | | || ||||| || || | ||| || | ||| Sbjct 26902 A--AGT-CTGGATAAAAAATTCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTT 26846 Query 47821 ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 47880 || | ||| | ||||||| |||| || | || || || ||||| ||||||||| Sbjct 26845 ACTTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAATATTTCCTCTATAATCT 26786 Query 47881 TCGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGA 47937 |||||||| ||||| |||||| ||| || | |||| || || ||||||| | | Sbjct 26785 TCGTCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGAA 26726 Query 47938 GCTATTCTACCATAGCA 47954 |||| ||| |||||||| Sbjct 26725 GCTACTCTTCCATAGCA 26709 >seq18550 Length=27441 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2463 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2522 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| ||| ||||| ||||| || || ||||| || || | | |||| Sbjct 2523 GACTCATTATTCCCCAGAATCTGAGCGGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2582 Query 79180 CTATTTCTAAGACCGTA 79196 || ||||| | ||| || Sbjct 2583 CTGTTTCTTATACCATA 2599 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||| ||||| |||||||| ||||||||||| || | || ||||| | || || ||| Sbjct 8749 ACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCGTTGC 8808 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 || || || ||||| ||||| || | || |||||| | | || || | ||||| || Sbjct 8809 TCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 8868 Query 80059 TCCAAGTATATGGC 80072 |||| ||| || || Sbjct 8869 TCCAGGTAAATAGC 8882 >seq42668 Length=14146 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| |||||||| || |||||| ||| | || || || || ||||| | Sbjct 540 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 481 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 | | ||| || |||||||||||||| || || || || |||||||| || | | |||| Sbjct 480 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTCT 421 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 420 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 370 >seq59957 Length=11192 Score = 89.7 bits (98), Expect = 7e-13 Identities = 232/345 (67%), Gaps = 18/345 (5%) Strand=Plus/Minus Query 183108 TTTGCCAACACGGATGGTGGATATTTGTTCATTGGAGTTGATA-ATAATACACACAAAGT 183166 || || ||||| ||||| ||||||||| ||||||| | ||| | || || |||| | Sbjct 3074 TTCGCAAACACTGATGGGGGATATTTGCTCATTGGTTTAGATGGAGAAAACCAGCAAA-T 3016 Query 183167 AGTTGGATTC-ACGGTGGGTCAAGA-CTACCTCAAACTGGTAGAGAGTGATATAGAAAAG 183224 ||||| || | | | | |||| | | || | |||||||||| ||||| ||| Sbjct 3015 GGTTGGTTTTGAAGCAGAG--AAGAGCAATCTTGAGAATCTAGAGAGTGAAATAGAGAAG 2958 Query 183225 TATATCAAAAGACTTCGTGTTGTGCATTTCTGTGAGAAGAAAGAGGACATCAAGTACGCG 183284 | |||| | || | ||| | || ||||||||||| ||||| | || | |||| | Sbjct 2957 TGCATCAGACAGCTGCTTGTCGGTCACTTCTGTGAGAAACAAGAGAAGATGAGGTACACA 2898 Query 183285 TGTCGATTCATCAAGGTGTATAAACCTGGGGAGGAGACTACCTCGACATACGTGTGCGCT 183344 || ||||||| || ||| ||| |||| | | | |||| || || || Sbjct 2897 TGCAAATTCATCCCAGTCCATAGACC---GGAGCCGTGTGC----TCATATGTCTGTGCA 2845 Query 183345 ATCAAAGTGGAAAGATGCTGCTGTGCCGTGTTTGCAGATTGGCCAGAATCATGGTACATG 183404 ||| |||||| |||| ||||||||| |||||||| | ||| || || ||| || || Sbjct 2844 CTCAGAGTGGAGAGATTCTGCTGTGCTGTGTTTGCTGCAGTGCCTGAGTCCTGGCACGTG 2785 Query 183405 G-ATACTAGTGGTAGTATGAAGAAGTATTCTCCAGATGAATGGGT 183448 | | || || || ||||||||| | | |||| |||||||| Sbjct 2784 GAAGACAAG----GGTGTGAAGAAGTTTACCTCAGAGGAATGGGT 2744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715122243954400