Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq125977 141 9e-29 seq172906 84.2 2e-11 seq55738 82.4 7e-11 >seq125977 Length=8618 Score = 141 bits (156), Expect = 9e-29 Identities = 186/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 13958 CCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14017 ||| ||||||| ||||| || || || ||||| || || || || |||||| | || | Sbjct 4824 CCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCCAC 4765 Query 14018 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttt 14077 | |||||||||| | | || | ||||| | ||||| ||||| | | || Sbjct 4764 AACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCCTT 4705 Query 14078 ttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACT 14137 ||||| | | || |||||| ||||||||||| || | ||||||| ||||||| | | Sbjct 4704 CTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATC 4645 Query 14138 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14197 | |||||| || ||||| || | || ||||||||||| |||||||||||||| || || Sbjct 4644 TTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCAAT 4585 Query 14198 CTGAAAACCATAAAAGCA 14215 || || ||||| || || Sbjct 4584 TTGGAAGCCATAGAAACA 4567 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| || | ||||||||||| |||||||| ||||| |||||||| | Sbjct 5036 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGG 4977 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13968 || ||||||| ||| ||||| || | ||| ||||||| Sbjct 4976 CCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTG 4940 >seq172906 Length=2851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 13896 TCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttttt 13955 ||||| || || || ||||||||||| || || | ||| ||||| | |||| || || Sbjct 1439 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1380 Query 13956 AACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGC 14014 | ||| || || |||||||||||||| || ||||| | || || || |||||||| || Sbjct 1379 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 1321 >seq55738 Length=16555 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 13527 AAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGA 13586 || ||| |||| || | ||| ||| || || || || || || ||||| | ||| Sbjct 11159 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 11100 Query 13587 TATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13646 || || | |||| || ||||||||||| || || ||||| ||||| ||||||||||| Sbjct 11099 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 11040 Query 13647 AAATCAAATGGATTT 13661 || ||||| |||||| Sbjct 11039 AAGTCAAACGGATTT 11025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477626431564000