Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq125977 123 2e-23 >seq125977 Length=8618 Score = 123 bits (136), Expect = 2e-23 Identities = 182/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 13746 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 13805 ||| ||||||| || || || || || ||||| || || || || |||||| | || | Sbjct 4824 CCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCCAC 4765 Query 13806 TAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAttt 13865 | |||||||||| | | || | ||||| ||||| ||||| | | || Sbjct 4764 AACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCCTT 4705 Query 13866 ttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACT 13925 ||||| | | || |||||| || || |||||||| | || |||| ||||||| | | Sbjct 4704 CTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATC 4645 Query 13926 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTAT 13985 | |||||| || ||||| || | || ||||||||||| ||||||||||| || || || Sbjct 4644 TTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCAAT 4585 Query 13986 CTGAAAACCATAAAAACA 14003 || || ||||| ||||| Sbjct 4584 TTGGAAGCCATAGAAACA 4567 Score = 89.7 bits (98), Expect = 5e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||| || | ||||||||||| |||||||| ||||| |||||||| | Sbjct 5036 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGG 4977 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTG 13756 || ||||||| ||| ||||| || | ||| ||||||| Sbjct 4976 CCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTG 4940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476492222114400