Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq125977 156 6e-33 seq18550 111 2e-19 seq36452 107 3e-18 seq172906 102 1e-16 seq42668 102 1e-16 seq55738 95.1 2e-14 >seq125977 Length=8618 Score = 156 bits (172), Expect = 6e-33 Identities = 191/260 (73%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||| ||||| || ||||| || ||||| |||||||| |||||||| || ||| |||| Sbjct 4826 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAGAGGCC 4767 Query 42209 ATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCC 42265 | || || |||||||| | | | |||| ||||| | ||||| ||||| Sbjct 4766 ACAACTCGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCCAACACAGGGCCCAGACGGCC 4707 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 42325 |||||||| ||| ||||||| || || || ||||| |||||||| | | || || | Sbjct 4706 TTCTTTTTCACAGAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAA 4647 Query 42326 TCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCC 42385 ||||||| || || || || | || || |||||||| ||||| |||||||| ||||| Sbjct 4646 TCTTTAATGTAAGTGTCAATGAGGAGCCTGTACATTTCAGAATGTATGTTTTCCATGGCA 4587 Query 42386 ATCTGAAATCCGTAGAAACA 42405 || || || || |||||||| Sbjct 4586 ATTTGGAAGCCATAGAAACA 4567 Score = 116 bits (128), Expect = 5e-21 Identities = 182/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 42389 TGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCT 42448 || || || |||||||| | |||||| |||||||| |||||| | ||| | || | Sbjct 4494 TGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCTACC 4435 Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 | |||||| || ||||| | ||||| || ||||| || |||| || | ||||||| Sbjct 4434 AGATTTTCATTGACTATGACATCACTCGCCGCAAAGAAAGCCAGGACGTAAGATATAAAA 4375 Query 42509 TATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGA-TATCTTTAGATATATCTACTTC 42567 | | | ||||| || || | | |||| | |||| |||| || || | || || || Sbjct 4374 TGTCTCTCGTCGTGT-TTCAGTGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCTC 4316 Query 42568 TTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTG 42627 || | ||||| || || || || || || || ||||| | |||||||||||| |||| Sbjct 4315 CTCAGCAGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTC 4256 Query 42628 AATTGGGAAAATAACAAA 42645 ||| || || | |||||| Sbjct 4255 AATGGGAAAGACAACAAA 4238 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||||| || || || || ||||| | |||||||||||| ||||| | |||||||||| Sbjct 5044 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 4985 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGA 42162 | || || || ||||| || || || || || ||||| ||||| || Sbjct 4984 ATGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGA 4939 >seq18550 Length=27441 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2463 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2522 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| ||| ||||| ||||| ||||| ||||| || || | | || | Sbjct 2523 GACTCATTATTCCCCAGAATCTGAGCGGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2582 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 2583 CTGTTTCTTATACCAT 2598 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || || ||||| || | |||||| ||||| || || || || ||||||| Sbjct 5800 CATACGTTTCATAGGGTCCACATTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 5859 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || || | |||||| | || ||||| ||||| ||||| || | Sbjct 5860 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTTTCAAAGGGGT 5919 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || || || || ||||||| ||||| || ||||| || || |||| || | Sbjct 5920 ACCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGTCGATGGC 5979 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 5980 GTTTATTTGA 5989 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 ||||||| ||| |||| | || || ||||| || | || ||||| || || |||||| Sbjct 14355 CTAGACAGTTGTGGACGGTTGGTCCCGGCATTGAAGAGAGTTGGAGAGGCATGAGTAAAC 14414 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || || ||||| || || |||||||| ||||| || | || ||||| || || || Sbjct 14415 CACTTCTCAGAAAGCAGGTTGTACGTTTCAATTGCAGCGTCGATATCTTCTTTGTGAATC 14474 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || | || | ||| ||||||||||| ||||||||| Sbjct 14475 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 14513 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| |||||||| ||||||||||| || | || ||||| | || || ||| Sbjct 8749 ACTCGCTTCATGAAGAGATCCGGAATCCAAAGGGCAAAGAAGAGATCCCGGGCTCGTTGC 8808 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || ||||| ||||| || | || |||||| | | || || | ||||| || Sbjct 8809 TCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 8868 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 8869 TCCAGGTAAATAGC 8882 >seq36452 Length=40126 Score = 107 bits (118), Expect = 3e-18 Identities = 184/258 (71%), Gaps = 12/258 (5%) Strand=Plus/Minus Query 39798 TCCAGTTGATCCAAATCCT--TGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 39855 |||||| || | || ||| ||||||||| | ||| |||| || | || |||||| Sbjct 26960 TCCAGTGGAGCAGAAACCTCCTGAGCTCCTTTCAGTGT--TATCCAGTGTTTCAACTTCT 26903 Query 39856 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 39915 ||| |||||||| | || |||| | | || ||||| || || | ||| || | ||| Sbjct 26902 A--AGT-CTGGATAAAAAATTCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTT 26846 Query 39916 ACATTGAAAGTACA-TTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 39974 || || ||| | | ||||||| |||| || | || || || ||||| |||||||| Sbjct 26845 AC-TTCAAACTTCTCTTTTCCAAAGTTAAACAGCACAACACCAATATTTCCTCTATAATC 26787 Query 39975 TTCGTCTATTACACCGCCTCCTATATCAAT-ACCT--TTTAGGGACAGACCAGACCTAGG 40031 ||||||||| |||||| |||||| ||| || | | |||| | || ||||||| | Sbjct 26786 TTCGTCTATGACACCGGCTCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGA 26727 Query 40032 AGCTATTCTACCATAGCA 40049 ||||| ||| |||||||| Sbjct 26726 AGCTACTCTTCCATAGCA 26709 >seq172906 Length=2851 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| || || || | |||||| || || |||||||||||||| ||||| | ||| || Sbjct 1439 TCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 1380 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGC 42207 ||||| || |||| |||||||| ||||| ||||| | ||||| || || |||||||| Sbjct 1379 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 1321 >seq42668 Length=14146 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || |||||||| || |||||| |||| | || || || ||||| || | Sbjct 540 TCCAGCCGTAGAAGTGCATACTTGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 481 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| |||||||||||||| || || || || |||||||| || | | |||| Sbjct 480 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCAGCAGCCATCTTGAGAACAGTCT 421 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | || ||||| | |||| | || || |||| Sbjct 420 TCTGAGAGATTTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 370 >seq55738 Length=16555 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Minus Query 42451 ATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATA 42510 |||||| || ||||| || ||||| || ||||| || |||| || || |||||||| Sbjct 6659 ATTTTCATTGACTATGCCATCACTCGCCGCAAAGAATGCCAGGACGTGAGATATAAAATG 6600 Query 42511 TTTTTCGTCCGGTGTTAATTTATTCCAATCATTGA-TATCTTTAGATATATCTACTTCTT 42569 | | ||||||||| || | |||| | |||| |||| || || | || || || | Sbjct 6599 TCTCTCGTCCGGT-TTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCTCCT 6541 Query 42570 CTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAA 42629 | ||||||| || || || || || || || ||||| | |||||||||||| |||| | Sbjct 6540 CAGCCGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGA 6481 Query 42630 TTGGGAAA 42637 ||||||| Sbjct 6480 -TGGGAAA 6474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 41723 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 41779 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 11159 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 11100 Query 41780 TATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATG 41839 || || ||||| || || || || || || ||||| ||||| | ||| |||||||||||| Sbjct 11099 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 11040 Query 41840 AAATCAAACGGATT 41853 || ||||||||||| Sbjct 11039 AAGTCAAACGGATT 11026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668199106949600