Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq125977 105 6e-18 seq152803 87.8 2e-12 seq172906 84.2 2e-11 seq55738 84.2 2e-11 >seq125977 Length=8618 Score = 105 bits (116), Expect = 6e-18 Identities = 177/256 (69%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 13476 TTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTG 13535 ||||||| ||||| ||||| | ||||||| ||||||||||| | ||| | ||| Sbjct 4496 TTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCTA 4437 Query 13536 CTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAA 13595 | | ||||| || ||||| | ||||| || ||||| ||||| || | || |||| Sbjct 4436 CCAGATTTTCATTGACTATGACATCACTCGCCGCAAAGAAAGCCAGGACGTAAGATATAA 4377 Query 13596 AttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCT 13655 | | | | |||| | | || | ||| | | ||| ||| || || | || |||| Sbjct 4376 AATGTCTCTCGTCGTGTTTCAGTGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCT 4317 Query 13656 CCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAA 13715 ||||| | ||||| || || || | || ||||| |||||| ||| ||||| | || Sbjct 4316 CCTCAGCAGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATT 4257 Query 13716 CAATGGGAAACACAAC 13731 |||||||||| ||||| Sbjct 4256 CAATGGGAAAGACAAC 4241 >seq152803 Length=3745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||| ||| ||||||||||||| || | Sbjct 2510 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATTCCAATGAGG 2569 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| |||||||| ||||| Sbjct 2570 CCGACAGGCAAGGCTTCTGTCAAAAA 2595 >seq172906 Length=2851 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 ||||||| || || || || |||||||| || || || || ||||| || |||| || | Sbjct 1441 CTTCATCCCTGCTGATCAGTTCGTTTGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 1382 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| || ||||||||||| || || || || || | ||||| || || ||||| | Sbjct 1381 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 1322 Query 13293 CTATCAACCTTTCACCATACG 13313 | | || ||||| || |||| Sbjct 1321 CCACCACTCTTTC-CCCTACG 1302 >seq55738 Length=16555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13420 AATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 ||| ||||| || || | | || |||||||| ||||| || |||||||| || ||||| Sbjct 7850 AATGTAAGTGTCAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTG 7791 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | ||||||| ||||||||||| Sbjct 7790 GAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTC 7752 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||||||||| || ||| | ||||| |||| |||| || ||||| |||||||| || Sbjct 11124 ATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTT 11065 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 ||||||| |||||||||||||| || || || ||||||| Sbjct 11064 CCCTTCTAGTGAAATATTTTCCATGAAGTCAAACGGATTTT 11024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429141574504920