Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq31296 129 1e-24 seq57751 125 2e-23 seq271237 122 2e-22 seq15407 104 5e-17 seq74550 91.5 3e-13 seq55738 91.5 3e-13 seq36452 89.7 1e-12 seq125977 87.8 4e-12 seq224230 86.0 1e-11 >seq31296 Length=16870 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || || || || ||||||| | ||| | || ||||| Sbjct 14464 ACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGGCAAAGTACGGCCATCTTCC 14523 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||| || || |||||||| ||||||||||| |||||||| |||||| | Sbjct 14524 AGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCCGG 14583 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || |||||||||| || || || || ||||| || || || || || Sbjct 14584 ATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAACCTCGAGCGTGATGGTTTTC 14643 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| || || || || |||||||| Sbjct 14644 CCTGTAAGGGTCTTCACGAAAATCTGCAT 14672 >seq57751 Length=11510 Score = 125 bits (138), Expect = 2e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || |||||||||||||| | | ||||| ||||| ||| | Sbjct 10681 AAGGACCAGGTGCAGGGTGGATTCTTTCTGAATGTCGTGATCAGAAAGAGTGTAACCACC 10740 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || ||||| ||| || ||||||| ||||| ||||| || |||||||| Sbjct 10741 TTCCGACTGCTTGCCTGCAAAGATTTGCTTCTGTTGGTCAGGGGGTATGCCCTCTTTATC 10800 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || ||||| || | || | || || || |||||||| ||||| || Sbjct 10801 CTGAATCTTGACCTTCACATTCTCAATGGCGTTACTGGGCTCCACCTCTAGGGTAATGGT 10860 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||| || | || || ||||| || ||||||||| Sbjct 10861 CTTGTGGGTCTGGGTCTTCACAAAGATTTGCATTTTG 10897 >seq271237 Length=352 Score = 122 bits (134), Expect = 2e-22 Identities = 157/218 (72%), Gaps = 9/218 (4%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || || || || |||||||| | ||| | || ||||| Sbjct 15 ACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 74 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || |||||||| || |||||||| ||||||||||| |||||||| |||||||| Sbjct 75 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 134 Query 104471 ATCTTTGCTTTTACATTTT---------CTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| || || ||||||| | || || ||||| ||||| || || Sbjct 135 ATCTTGGCCTTGACATTTTTTTTCTGTCATTTAGTGTCCGAGGGTTCAACCTCAAGCGTG 194 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| || || || || |||||||| Sbjct 195 ATGGTTTTCCCCGTAAGGGTCTTCACTAAAATCTGCAT 232 >seq15407 Length=30010 Score = 104 bits (114), Expect = 5e-17 Identities = 98/124 (79%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || |||||||| | ||| || ||||| || ||||| |||||| || Sbjct 29159 TCCTTTTGAATGTTCTAGTCAGACAAAGTATGGCCATCTTCCAGCTGTTTACCAGCATAA 29218 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 | | ||||||| ||||||| || ||||| || ||||||||| |||| || ||||||||| Sbjct 29219 -TCAACCTCTGTGGATCAGGGGGAATTCCCTCCTTATCCTGAGTCTTGGCCTTTACATTT 29277 Query 104489 TCTA 104492 |||| Sbjct 29278 TCTA 29281 >seq74550 Length=14828 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || ||||| | ||| || |||||| | | | | | || |||||||||| || ||||| Sbjct 522 GAATCTTT-TAAATGTTGTAGTCAAACAAACTACAGCCACCTTCTAGTTGCTTACCAGCG 580 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 ||||| |||||||| ||||||||| | | || ||| ||| || | || |||||| Sbjct 581 AAAATCAGCCTCTGCTGATCAGGAAGAAATCTTTC------CTGGATACTGGCCTTTACA 634 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT-ACCAGTAAGTGTTTT 104544 ||||||| || || ||||| | || ||||| || | || || || || || || Sbjct 635 TTTTCTATAGTGTCTGAGGGTTCAATTTCGAGTGTGATGTTTTTCCCCTGTTAGGGTCTT 694 Query 104545 TACAAATATCTGCATTTTG 104563 || ||| |||||||| ||| Sbjct 695 TATAAAAATCTGCATCTTG 713 >seq55738 Length=16555 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 269489 AACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTC 269548 || || |||||||||||| || ||||| ||||| ||| ||||||| ||| | || ||| Sbjct 11017 AAAGTAGAAAATCCGTTTGACTTCATGGAAAATATTTCACTAGAAGGGAAGACAAACTTC 11076 Query 269549 TTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAAT 269608 || |||||||| || | | ||||||| ||||| || ||||| | | || ||| ||| Sbjct 11077 TTTGAGAAGCGAGTGGGCGAGTATCAGAGGATGGGGGTGATGTCAAATTCAGCAGAGAAT 11136 Query 269609 ATTTTCACTACAGATGCAGAATTCT 269633 |||||| ||||| || |||| Sbjct 11137 TCTTTCACCTTGGATGCTGACTTCT 11161 >seq36452 Length=40126 Score = 89.7 bits (98), Expect = 1e-12 Identities = 170/246 (69%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 65729 TTCAAATATGATTTGAGCTACTCTATCGCCTTTACATATATTAAACTCCTCCTTACCGAA 65788 |||| | |||| || || | | ||| ||||| || | ||||| ||| || || || Sbjct 26882 TTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTTACTTCAAACTTCTCTTTTCCAAA 26823 Query 65789 ATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATCTATAACACCAGCACCTAC 65848 ||||| | | | |||| ||| |||||||| ||| ||||| ||||| || ||||| Sbjct 26822 GTTAAACAGCACAACACCAATATTTCCTCTATAATCTTCGTCTATGACACCGGCTCCTAC 26763 Query 65849 ATCTATAAAGTAATTATAC-GCTAATCCAGATCGGGGAGCTATTCTACCATAATATCCTC 65907 |||||| |||| || ||| || || ||||| || | ||||| ||| ||||| | || Sbjct 26762 ATCTATGAAGTGCTT-TACTGCCAAGCCAGACCGTGAAGCTACTCTTCCATAGCACCCAG 26704 Query 65908 TAGGAAC--TGATATAATCAAATCAGTAAATACCAATTCTTTGTCCATGGGTTGTACGGT 65965 |||||| |||| | | | || || || | |||| ||||||||| ||| || Sbjct 26703 AAGGAACAGTGATCTGA--ATGTCTGTTTTCACAATGGCTTTCTCCATGGGTGGTATTGT 26646 Query 65966 ATAATC 65971 |||||| Sbjct 26645 ATAATC 26640 >seq125977 Length=8618 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 268729 TGATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGA 268788 |||||| ||| ||||||||| | |||| || || || ||||||| || || || || Sbjct 4264 TGATATCTGGCAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACTGCTGAGGAGGTGGA 4323 Query 268789 TCTGTCTTATGACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATC 268848 || || | || | | | ||| || | |||| || || ||| |||||||| Sbjct 4324 CCTCTCCAAGGATATTCAACACTGGGAAGCACTGAAACACGACGAGAGACATTTTATATC 4383 Query 268849 TTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAA 268908 ||| | || || || ||||| | ||||||| || || || |||||||| |||||| Sbjct 4384 TTACGTCCTGGCTTTCTTTGCGGCGAGTGATGTCATAGTCAATGAAAATCTGGTAGAGTG 4443 Query 268909 GTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCA 268959 || | ||||| || ||| || | || ||| | ||||| || || ||||| Sbjct 4444 CTTTAGCCAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCA 4494 >seq224230 Length=2161 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 104437 CTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGT 104496 ||| || ||||| || || || ||||||||||| ||||| || || ||||| | | ||| Sbjct 1855 CTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTCACATTCTTGATGGT 1914 Query 104497 ATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTG 104556 || || ||||| ||||| || || || ||||| | || || || || || || || || Sbjct 1915 GTCACTGGGTTCCACCTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCACGAAGATTTG 1974 Query 104557 CATTTTG 104563 ||||||| Sbjct 1975 CATTTTG 1981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146228311745680