Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq36452 105 6e-18 seq41226 96.9 3e-15 >seq36452 Length=40126 Score = 105 bits (116), Expect = 6e-18 Identities = 136/185 (74%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 5315 ATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGT-CGCTGTT 5373 || ||||| || || ||||| || |||| || || || || || ||||| | | || || Sbjct 26887 ATTCGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTTACTTCAAACTTCTCT-TT 26829 Query 5374 TCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGC 5433 ||| |||||||||||||| || || | ||| |||| || |||||||| || || || || Sbjct 26828 TCCAAAGTTAAACAGCACAACACCAATATTTCCTCTATAATCTTCGTCTATGACACCGGC 26769 Query 5434 GCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCA 5493 || || || || ||||| || || || | ||| || |||| |||| | ||| ||||| Sbjct 26768 TCCTACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGAAGCTACTCTTCCATAGCA 26709 Query 5494 ACCAG 5498 |||| Sbjct 26708 CCCAG 26704 >seq41226 Length=14440 Score = 96.9 bits (106), Expect = 3e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||| | || ||||| | | || || ||||| ||||||||| ||| |||||||||| Sbjct 4040 GGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGATG 3981 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||| || || || || || || ||||| ||||| | ||||| |||||||| ||| Sbjct 3980 CCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGAGAGAAG 3921 Query 128994 CTCAAAACGCT 129004 || || || || Sbjct 3920 CTGAAGACCCT 3910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445788917435200