Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq41226 96.9 3e-15 seq36452 82.4 7e-11 >seq41226 Length=14440 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 127162 GGCTATTTAGGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATG 127221 || || || || |||||| | |||| || ||||| ||||| ||||| | |||||| ||| Sbjct 4040 GGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGATG 3981 Query 127222 CCACAGGCAGAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAG 127281 || |||||||| || || || || || || || || || | || |||||||| || ||| Sbjct 3980 CCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGAGAGAAG 3921 Query 127282 CTGAAGAC 127289 |||||||| Sbjct 3920 CTGAAGAC 3913 >seq36452 Length=40126 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 5582 CGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCG 5641 || || || || ||||| || || || || || | ||||| || || | | | || Sbjct 26884 CGTTCACAAATGAGCTGTGCAATCCGATCACCTTTTTTTACTTCAAACTTCTCTTTTCCA 26825 Query 5642 AAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCC 5701 ||||| |||||||| || || | || || | || || ||||||| || || || || Sbjct 26824 AAGTTAAACAGCACAACACCAATATTTCCTCTATAATCTTCGTCTATGACACCGGCTCCT 26765 Query 5702 ACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCA 5761 || || ||||||||||| || |||| ||| || || | ||| || | || ||||||||| Sbjct 26764 ACATCTATGAAGTGCTTTACTGCCAAGCCAGACCGTGAAGCTACTCTTCCATAGCACCCA 26705 Query 5762 TCGGGAAGCTGT-ATCTGCAGGTCCGT 5787 |||| | || ||||| | ||| || Sbjct 26704 GAAGGAA-CAGTGATCTGAATGTCTGT 26679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428217538207520