Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq11430 89.7 3e-13 >seq11430 Length=26483 Score = 89.7 bits (98), Expect = 3e-13 Identities = 123/168 (73%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 25490 TAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGG 25549 ||| || || | || || |||| ||| ||||| || |||||||| ||||| ||||| Sbjct 7535 TAGGCCTGTGATGTGTGCAATCACGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 7594 Query 25550 TACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC-GTCG 25608 || || | ||||| || || ||||||||||||||||| || || ||||| | ||| Sbjct 7595 CACGCCCAGGCCCATATCTCCT-GACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCG 7653 Query 25609 CTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 || || || || ||||| | || || ||| ||||| || || || ||| Sbjct 7654 CT-ACATAGAATTGACAGAGGGCGTGGCAAGGAGGCAGTGCCATCAGG 7700 Score = 82.4 bits (90), Expect = 5e-11 Identities = 125/174 (72%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| ||||||||||| || || || || || ||||| Sbjct 12945 CATATCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 13004 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || | | |||| | || ||| | |||| ||| |||| ||| |||||||| | Sbjct 13005 CCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCAT 13063 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 25945 ||||||| | || || || ||| || ||||| | |||||||| || |||| Sbjct 13064 CCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCC-CTGA 13116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338684793653580