Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq31296 95.1 1e-14 seq177860 84.2 2e-11 >seq31296 Length=16870 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | || ||||| | |||||| ||| ||||||||| |||||||| |||| Sbjct 14445 ACCACCACGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGG 14504 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || ||||||||||| || | | || | | ||||||||| || Sbjct 14505 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGGGAAGATCAGCCTCTGCTGATCAGGAGG 14564 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| || || ||||| | |||| || || | | ||| Sbjct 14565 AATTCCTTCCTTATCCCGGATCTTGGCCTTGACATTTTCTATAGTGTCTGAGGGCTCAAC 14624 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||||| || |||||||| || || || || ||||| |||||||||||| || Sbjct 14625 CTCGAGCGTGATGGTTTTCCCTGTAAGGGTCTTCACGAAAATCTGCATCCTG 14676 >seq177860 Length=2647 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/224 (69%), Gaps = 9/224 (4%) Strand=Plus/Minus Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAAT---TGTCGC 48568 || ||||| | |||||||||| ||||||||| |||||||| |||| || | | | || Sbjct 2579 CTCAACACCAGATGAAGTGTGGACTCCTTTTGGATGTTGTAGTCAGACACTAAGTATGGC 2520 Query 48569 TCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTT--T 48626 | || ||||||||||| || || | || | | || |||||| || | | || | Sbjct 2519 -CATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTCCTGATCA---GGAAGAATTCCT 2464 Query 48627 CCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTG 48686 |||| ||| || || ||||| | ||||||| || | || || || || Sbjct 2463 CCTTATCCTGGATCTTGGCCTTGACATTTTCTATGGTGTCCAAGGGTTCAACCTTGAGTG 2404 Query 48687 TTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | |||||||| || || || || ||||| |||||||||||| || Sbjct 2403 TGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATCCTG 2360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419451938710460