Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ellobius_20talpinus_20[genbank_20GCA_5F001685095.1_202016-07-14] 350,460 sequences; 2,265,966,243 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq26677 150 3e-31 seq108476 123 4e-23 seq66105 123 4e-23 >seq26677 Length=18315 Score = 150 bits (166), Expect = 3e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 9632 TGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACA 9691 ||||||| || || |||| || ||| || ||||| || ||||| || ||||| |||| Sbjct 10523 TGGTCTGGAAGAGCCGTTCATCGTCCCACTCAGGATGCTCCCGTTTAAGCACATCACACA 10464 Query 9692 CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAA 9751 |||||||||| |||| |||||||| || || |||||||| |||||||||||||| |||| Sbjct 10463 CTCTGTTGTGCTCCCGCAGCCAGATGGTGGCATACATCATCAGACCAGGCACCAGACCAA 10404 Query 9752 AAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGT 9811 | |||| || || || |||| || | || || || | | || || |||||||| | Sbjct 10403 AGACCTCCTGCCCCACTGCCAACCGTAGATGCTCAGGGATGTGAGGGGGGTAGATCATCT 10344 Query 9812 GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 ||||| ||||||||| | ||| ||||||| || || |||| Sbjct 10343 CTACCTGAGTATCTTTGACTGTGGGAGGATACACCTCTCCACCAAT 10298 Score = 141 bits (156), Expect = 1e-28 Identities = 203/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || || |||||| |||||||| || | ||| | |||| ||| Sbjct 12054 AAGGGACAGCCCTTCACATTCTTACAGATGAGAGACTGAATGGAGGCAGTGTTGATAATC 11995 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| ||||| ||||| || || ||||| || |||||||| || || |||||| Sbjct 11994 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAGATGGGA 11935 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| |||| || ||| Sbjct 11934 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 11875 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | ||||| ||||||||||||| | | | ||||| ||||| || || ||| Sbjct 11874 ATAGCATCTGGACGTGGCTTTTCCACCAGCAGGGCAGGGTACAGCTCCATGGCATCAATG 11815 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||| ||||| | || || || |||||||| ||||||| Sbjct 11814 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCTG 11769 Score = 116 bits (128), Expect = 5e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| |||||||||| ||||| | || |||||| | ||| ||| | || Sbjct 9191 TCTTACCCCATGGCCCAGTCCTTGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 9132 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| ||||||| |||||||| | || | ||| || ||||| Sbjct 9131 AAACTGATGAGTGAAGTGCTGGGCAAAAAATGCAAACATCATATTCGAGCCTTGAGGATC 9072 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 ||| |||| | |||| |||||| ||| |||| ||| Sbjct 9071 AGGAATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAAC 9033 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 10288 CACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGT 10347 ||||||| || || | ||||| || || |||| | || ||||| || || | || Sbjct 8451 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCGGCTACAGGAGGAAGTGCTCTGGTGT 8392 Query 10348 AATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGG 10407 | |||||||| |||||||| ||||||||| || ||| | |||| | ||||||| | | Sbjct 8391 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACGTTGTAAGTTG 8332 Query 10408 GAGGGCTGTCAATCAAATCGGATCT 10432 | || ||||||||||||| ||||| Sbjct 8331 GCGGACTGTCAATCAAATGTGATCT 8307 >seq108476 Length=6366 Score = 123 bits (136), Expect = 4e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || ||||| |||||||| ||||| || | || || || ||| ||| Sbjct 5250 AAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATTC 5191 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| || ||||||||||| |||||||| | ||| | |||||||| || |||||| Sbjct 5190 CCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGATG 5131 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || |||||||| | || || | ||| ||||| | || |||||||| Sbjct 5130 GAGTTGGGCTGGCACTTTTCCAGAAGCAACCCTGGGTAGAACTCTAAGGCATCGATGTCA 5071 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || | || || || || | ||| ||||||| Sbjct 5070 CCATACAGCTCCTCCAACTCAGCTGCCATCTTCTTCTCTCCTG 5028 >seq66105 Length=10384 Score = 123 bits (136), Expect = 4e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || ||||| |||||||| ||||| || | || || || ||| ||| Sbjct 4744 AAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATTC 4685 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| || ||||||||||| |||||||| | ||| | |||||||| || |||||| Sbjct 4684 CCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGATG 4625 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || |||||||| | || || | ||| ||||| | || |||||||| Sbjct 4624 GAGTTGGGCTGGCACTTTTCCAGAAGCAACCCTGGGTAGAACTCTAAGGCATCGATGTCA 4565 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || | || || || || | ||| ||||||| Sbjct 4564 CCATACAGCTCCTCCAACTCAGCTGCCATCTTCTTCTCTCCTG 4522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 705420929982400